GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002684-TA|BGIBMGA002684-PA|IPR006616|Protein of unknown
function DM9
         (206 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    27   2.0  
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ...    27   2.6  
SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces...    26   3.4  
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|...    26   4.5  
SPBC83.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   7.9  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   7.9  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   7.9  

>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 26  RVSFPLSAEPH-ITFYSKFPPHQELYQADILEGNVV 60
           RV  P   + H +   + FPPH++++Q   L+G+ +
Sbjct: 416 RVKLPFGRKIHFVVMNNLFPPHRDIHQTFDLKGSTL 451


>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/53 (24%), Positives = 24/53 (45%)

Query: 55  LEGNVVDYYNKDPPTSFIEFKDFWISWHSGKFQYGLCPNIEPMRCIKLQNAKK 107
           +EG + D  +K PP      ++ +++WH     Y   P++E       +  KK
Sbjct: 216 VEGELADPDDKLPPPGMPYNRNQYVAWHGASAVYHPQPSLEAQLPAAARKRKK 268


>SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 13/59 (22%)

Query: 114 GFNYEWVKTSDNYIPENAVV-------------GGYSEVRYEPLYIGRAMVKNFLLIGK 159
           G ++EW K+ D  +P   +V             G Y E RYE + +   ++KNF  + K
Sbjct: 111 GLDWEWCKSPDRGLPRPDLVIFLNVDPRIAATRGQYGEERYEKIEMQEKVLKNFQRLQK 169


>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/28 (32%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 108 IGFIL-CGFNYEWVKTSDNYIPENAVVG 134
           +GF++ C F++E    ++N+IP +   G
Sbjct: 151 VGFLIGCSFSFEAALVAENFIPRHLPTG 178


>SPBC83.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 161

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 86  FQYGLCPNIEPMRCIKLQNAKKIGFILCGFNYEWVKTSDNYIPENAVVGGYSEVRYEPLY 145
           F Y L  +++  +C+   N   +  +   F   + K S  Y  E      +S  RY  L 
Sbjct: 24  FNYRLPADMKFYKCVLTINYISVSSMSGPFTGPYEKYSSGYFSEFGPQHLFSINRYHGLR 83

Query: 146 IGRAMVKNFLLIGKVHVLYN--TCYV 169
             R   + +  +G  H+LY+  T YV
Sbjct: 84  FSRQSSQEYDSVG--HILYSPITYYV 107


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/55 (25%), Positives = 26/55 (47%)

Query: 148 RAMVKNFLLIGKVHVLYNTCYVPFDNMEIEVGSYEILVEKNVRRGLFHDENNIVI 202
           + +V+ + +   + V   T  +    ME + G +E + E  V+R    +E  IVI
Sbjct: 600 KEIVELYRVYAGIDVAIGTLQLGLKRMESKAGKWECIKEIEVKRFEIVEEEEIVI 654


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 115  FNYEWVKTSDNYIPENAVVGGYSEVRYEPLYIG 147
            F Y   +T+ +Y  E  V  GY+    EP+Y G
Sbjct: 1022 FIYSEQQTAADYFGEQLVKAGYNYHGNEPMYSG 1054


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.140    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,077,557
Number of Sequences: 5004
Number of extensions: 48734
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 7
length of query: 206
length of database: 2,362,478
effective HSP length: 70
effective length of query: 136
effective length of database: 2,012,198
effective search space: 273658928
effective search space used: 273658928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)