GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002684-TA|BGIBMGA002684-PA|IPR006616|Protein of unknown
function DM9
         (206 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_34249| Best HMM Match : fn3 (HMM E-Value=0)                         27   8.4  

>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 127  IPENAVVG---GYSEVRYEPLYIGRAMVKNFLLIGKVHVLYNTCYVPFDNMEI 176
            IP + V G   GY  VRY+P+  G  M+K+ + + +V V  +T  V    ++I
Sbjct: 2483 IPSHCVPGILLGY-RVRYKPVSTGDVMIKSKIPVSEVEVGPSTQSVTLTGLDI 2534


>SB_34249| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 2195

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 53  DILEGNVVDYYNKDPPTSFIEFKDFWISWHS 83
           D   G  VD Y  D PT  + FK F  +W S
Sbjct: 332 DYFTGTAVDVYPLDQPTDIVNFKRF--AWGS 360


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.140    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,380,831
Number of Sequences: 59808
Number of extensions: 307588
Number of successful extensions: 404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 3
length of query: 206
length of database: 16,821,457
effective HSP length: 79
effective length of query: 127
effective length of database: 12,096,625
effective search space: 1536271375
effective search space used: 1536271375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)