GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002684-TA|BGIBMGA002684-PA|IPR006616|Protein of unknown
function DM9
         (206 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125442-11|AAD12791.1|  624|Caenorhabditis elegans Hypothetical...    29   1.8  
AF100306-4|ABB88215.1|  166|Caenorhabditis elegans Hypothetical ...    29   1.8  
AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical ...    29   3.1  
AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z68104-1|CAA92112.1|  866|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine r...    27   9.6  

>AF125442-11|AAD12791.1|  624|Caenorhabditis elegans Hypothetical
           protein H04M03.1 protein.
          Length = 624

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 75  KDFWISWHSGKFQYGLCPNIEPMRCIKLQNAKKIGFILCGFNYEW 119
           K  W+ WH GK  YG  P  + M   +L + K +  +L G   E+
Sbjct: 353 KSVWLHWHDGKI-YGFSPENDEME--ELGSPKNLANLLTGVISEY 394


>AF100306-4|ABB88215.1|  166|Caenorhabditis elegans Hypothetical
          protein T24C4.8 protein.
          Length = 166

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 74 FKDFWISWHSGKFQYGL 90
          F   WISW  GKF YG+
Sbjct: 23 FTKLWISWSIGKFSYGI 39


>AF099002-3|AAO91691.1|  570|Caenorhabditis elegans Hypothetical
           protein Y71H10B.1c protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 125 NYIPENAVVGGYSE----VRYEPLYIGRAMVKNFLLIGKVHVLYNT 166
           N   +  V  GY E     +Y+P++  R  ++NF  +   HV Y+T
Sbjct: 19  NMAVQRLVDTGYPEEIKSFKYDPIFPVRGKLRNFRFVSVAHVFYST 64


>AC006632-1|AAK85466.1|  311|Caenorhabditis elegans Hypothetical
           protein F28A10.1 protein.
          Length = 311

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)

Query: 46  HQELYQ--ADILEGNVVDYYNKDPPTSFIEFKDFWISWHSGKFQ 87
           H ++Y    DIL+ NV+DY+  D  + + E+  F I + +GK +
Sbjct: 204 HVDIYYFLKDILDKNVIDYFWMD--SEYAEYGTFDIFYENGKLE 245


>Z68104-1|CAA92112.1|  866|Caenorhabditis elegans Hypothetical
           protein F08B12.1 protein.
          Length = 866

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 37  ITFYSKFPPHQELYQADILEGNVVDYYN--KDPPTSFIEFKDFWI 79
           ITF S   PHQEL     L G++V+  +  +     +IEF+  WI
Sbjct: 60  ITFVSYPFPHQELLNDQALTGDLVELQSSVEKKYWQWIEFQKGWI 104


>Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical
           protein T14D7.2 protein.
          Length = 734

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 4/35 (11%)

Query: 80  SWHSG-KFQYGLCPNIEPMRCIKLQNAKKIGFILC 113
           +W+ G +F Y L   + P+  + L+ A KIGFILC
Sbjct: 451 TWYIGTEFIYYL---LSPIFLLTLRKAPKIGFILC 482


>AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine
           receptor, class w protein91 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 2/23 (8%)

Query: 59  VVDYYNKD--PPTSFIEFKDFWI 79
           ++++Y  D  PP SF+ F+ FW+
Sbjct: 91  ILNFYGSDCTPPNSFLTFQIFWV 113


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.140    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,680,743
Number of Sequences: 27539
Number of extensions: 255360
Number of successful extensions: 398
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 8
length of query: 206
length of database: 12,573,161
effective HSP length: 78
effective length of query: 128
effective length of database: 10,425,119
effective search space: 1334415232
effective search space used: 1334415232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)