GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002683-TA|BGIBMGA002683-PA|IPR008279|PEP-utilising
enzyme, mobile region
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    29   0.88 
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    28   2.0  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   2.7  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    27   3.5  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    26   6.2  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   6.2  
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    26   8.2  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   8.2  

>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 16/48 (33%), Positives = 22/48 (45%)

Query: 60  LQNLRSSPEEPQQSKTTDEVIASLTTPKKNSTRRAVRHREGTKAHLIL 107
           L  +  SP EP  S T    I +L+ P+ N T  +   +  T   LIL
Sbjct: 561 LHTIVPSPYEPPLSVTPSTAITNLSIPESNRTNSSASSKSFTMNDLIL 608


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 42  FDLYTKPWILVPEEMMKILQNLRSSPEEPQQSKTTDEVIASL-TTPKKNSTRRAVRHREG 100
           FDL+     L PE++  +LQ+L+      QQ  +  E I SL +  +K+ T   ++ +EG
Sbjct: 103 FDLFNSEKPLSPEKISTMLQHLQMRLSIEQQCVSGIEKIMSLYSKEQKDKTDVIIKLKEG 162


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 1428

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/38 (23%), Positives = 24/38 (63%)

Query: 48 PWILVPEEMMKILQNLRSSPEEPQQSKTTDEVIASLTT 85
          P+  +P+ ++K ++  R +  +PQ +K + ++ A ++T
Sbjct: 24 PFETIPDPVLKYVKRARDAELQPQLAKVSQKLFADIST 61


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 75  TTDEVIASLTTPKKNSTRRAVRHRE 99
           TTD+ I SL  PKK  ++R + HRE
Sbjct: 191 TTDKAIFSLNVPKKKRSQRWI-HRE 214


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 100 GTKAHLILAAHKMRLALLRLGDMLVRQW 127
           G + H++  A KM+L LL  G M +  W
Sbjct: 494 GHEPHILANAFKMQLNLLEKGTMKIDHW 521


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 37  RAIMEFDLYTKPWILVPEEMMK 58
           R IME D+Y + W L P+ M K
Sbjct: 343 RCIMERDVYPRRWGLGPQSMKK 364


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/64 (21%), Positives = 29/64 (45%)

Query: 230 LITHATDIGWSPYFPLLTGIVTELGGLISHGAVIAREYGLPCIVGATDATEIFRTGDLVR 289
           ++  A   G  P FP   G+  +L       A+ +  Y +       +  + + +G+L+R
Sbjct: 85  MLDEALAFGVFPNFPSKMGVTVQLDTTYVAPALCSHLYKIVTKTTKVEGRKCWTSGELLR 144

Query: 290 LSGT 293
           L+G+
Sbjct: 145 LNGS 148


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 122 MLVRQWYLPHPDLVFFFRLGELQEYVRK 149
           +L  Q+Y+P+P L   F + + Q + RK
Sbjct: 20  LLAIQYYVPNPYLDEIFHIAQAQRFCRK 47


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.138    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,472,753
Number of Sequences: 5004
Number of extensions: 59526
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 8
length of query: 320
length of database: 2,362,478
effective HSP length: 73
effective length of query: 247
effective length of database: 1,997,186
effective search space: 493304942
effective search space used: 493304942
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)