GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002683-TA|BGIBMGA002683-PA|IPR008279|PEP-utilising
enzyme, mobile region
         (320 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF312028-1|AAG60045.1|  782|Homo sapiens myosin binding subunit ...    34   0.76 
AB209452-1|BAD92689.1|  736|Homo sapiens protein phosphatase 1, ...    34   0.76 

>AF312028-1|AAG60045.1|  782|Homo sapiens myosin binding subunit 85
           protein.
          Length = 782

 Score = 33.9 bits (74), Expect = 0.76
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 4/96 (4%)

Query: 198 IEATSVCGGEVVARACVVKELSEVDQLQQGDVLITHATDIGWSP-YFPLLTGIVTELGGL 256
           +++T+  G   + +AC+ + L  V  L +    +  A + GW+P +     G +     L
Sbjct: 94  LDSTNADGISALHQACIDENLEVVRFLVEQGATVNQADNEGWTPLHVAASCGYLDIARYL 153

Query: 257 ISHGAVIA---REYGLPCIVGATDATEIFRTGDLVR 289
           +SHGA IA    +  LP  +  +DA E     ++ R
Sbjct: 154 LSHGANIAAVNSDGDLPLDLAESDAMEGLLKAEIAR 189


>AB209452-1|BAD92689.1|  736|Homo sapiens protein phosphatase 1,
           regulatory subunit 12C variant protein.
          Length = 736

 Score = 33.9 bits (74), Expect = 0.76
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 4/96 (4%)

Query: 198 IEATSVCGGEVVARACVVKELSEVDQLQQGDVLITHATDIGWSP-YFPLLTGIVTELGGL 256
           +++T+  G   + +AC+ + L  V  L +    +  A + GW+P +     G +     L
Sbjct: 50  LDSTNADGISALHQACIDENLEVVRFLVEQGATVNQADNEGWTPLHVAASCGYLDIARYL 109

Query: 257 ISHGAVIA---REYGLPCIVGATDATEIFRTGDLVR 289
           +SHGA IA    +  LP  +  +DA E     ++ R
Sbjct: 110 LSHGANIAAVNSDGDLPLDLAESDAMEGLLKAEIAR 145


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.138    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,819,395
Number of Sequences: 224733
Number of extensions: 1954017
Number of successful extensions: 3884
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3884
Number of HSP's gapped (non-prelim): 2
length of query: 320
length of database: 73,234,838
effective HSP length: 90
effective length of query: 230
effective length of database: 53,008,868
effective search space: 12192039640
effective search space used: 12192039640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)