GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002682-TA|BGIBMGA002682-PA|IPR002192|Pyruvate phosphate
dikinase, PEP/pyruvate-binding
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    31   0.70 
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    31   0.92 
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    29   2.8  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    27   8.6  

>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 11/117 (9%)

Query: 566 PSRLLITANYGLGESVVSGTVEPDTIIVKREPNGVLTIQKRELGSKTRRHVASSSGGVIT 625
           P RL      G+ +   S  ++   +++   PN +   Q  +L S+T  +V +    V+ 
Sbjct: 435 PGRLEKEIEIGIPDK--SARLDIIKLLLSGVPNEINDAQLEDLASRTHAYVGADLAAVVR 492

Query: 626 EDVPEK-ERSVACLNDTEVLKLARLGVVQEELWGAGRDIEWAISGVKRWTEEELLHE 681
           E      +R+++   DT  L +   G VQ +      D+E+A+S V++    E + E
Sbjct: 493 EAALRAIKRTISLQKDTSGLDI--FGAVQMD------DLEFALSSVRQSAMREFMME 541


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 11/38 (28%), Positives = 23/38 (60%)

Query: 775 KIADENIHKTALIRRKPHWTDRIRLIHHMIMSILTSKW 812
           ++ D+N+  T L+ RK  W D  +++++ IM +   K+
Sbjct: 658 RLKDDNVFPTLLLLRKFDWKDDYQILYNTIMEVWNIKY 695


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 357 LSFEERAATCTDYVGGKGASLA-LLASVQND 386
           L F ER A    Y  GKG+S A L AS+Q D
Sbjct: 382 LKFVERLAPIAVYTSGKGSSAAGLTASIQRD 412


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 237  VRLPDYRVLTITDTDLIMSDFCETPGGIPSAYTINIHTKERSL------KVVLRIGEEG 289
            VR  D+R+ T  D  LI         GIPS     I   +R+L      K+  R GEEG
Sbjct: 1292 VRKQDHRLYTRLDNKLIDEAEVTLEEGIPSVVECEIINTDRTLGATLSNKISKRYGEEG 1350


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,811,341
Number of Sequences: 5004
Number of extensions: 156445
Number of successful extensions: 370
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 368
Number of HSP's gapped (non-prelim): 5
length of query: 882
length of database: 2,362,478
effective HSP length: 79
effective length of query: 803
effective length of database: 1,967,162
effective search space: 1579631086
effective search space used: 1579631086
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)