Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002682-TA|BGIBMGA002682-PA|IPR002192|Pyruvate phosphate
dikinase, PEP/pyruvate-binding
(882 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1109 - 11726818-11727719,11728225-11728394,11730407-117304... 52 3e-06
03_04_0169 - 17959262-17959304,17959441-17959532,17959682-179597... 41 0.005
12_02_0995 + 25104303-25104486,25105164-25105275,25106466-251065... 32 2.3
08_02_1589 + 28070286-28070525,28072224-28072565 32 2.3
12_02_0072 + 13218669-13218706,13218715-13218781,13220400-132204... 31 3.0
11_01_0563 + 4423609-4423846,4424671-4426132,4428949-4429364,443... 31 3.0
01_06_0962 + 33402971-33403345,33403633-33403767,33408316-33408597 31 4.0
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65... 31 5.3
11_04_0096 + 13435988-13436803,13436880-13437053,13437673-134378... 30 7.0
03_06_0215 + 32416097-32416236,32416727-32416851,32417092-324171... 30 7.0
11_01_0705 - 5795976-5796051,5796450-5796518,5796632-5796780,579... 30 9.3
10_08_0733 - 20183271-20183725,20183860-20183935,20184202-20184210 30 9.3
10_01_0354 - 3887790-3890204 30 9.3
06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258 30 9.3
>12_01_1109 - 11726818-11727719,11728225-11728394,11730407-11730483,
11730559-11730645,11730730-11730816,11731887-11731991,
11732133-11732168,11733636-11733754,11733862-11734067,
11735854-11735906,11735986-11736153,11736507-11736591,
11737845-11738023,11738939-11739070,11739209-11739295,
11739920-11739972,11740820-11740892,11741791-11742442,
11743165-11743229
Length = 1111
Score = 51.6 bits (118), Expect = 3e-06
Identities = 87/347 (25%), Positives = 135/347 (38%), Gaps = 28/347 (8%)
Query: 342 LKWLLKKDAGFVGYCLSFE--ERAATCTDYVGGKGAS---LALLASVQN----DEGYRVP 392
+ W L + G SF E + + G K A+ L++LAS+ N D+G VP
Sbjct: 762 IPWALPQQKSKSGVNGSFAALELSEASVESAGAKAAACRTLSVLASLSNKVYSDQG--VP 819
Query: 393 PGFCITTKALEKHLQLHTELKAAIQDIXXXXXXXXXXXFKERCQKVSSLFLALELSADIK 452
F + + A+ + LK + K +V SL ALEL A
Sbjct: 820 AAFRVPSGAVIPFGSMEDALKKSGSLESFTSLLEKIETAKVENGEVDSL--ALELQA--- 874
Query: 453 KDILEYMQELRSKSAQLKDA--QELRFAVRSSAVGEDSEALSAAGQNETILGCVTDDDVI 510
I+ ++ LK Q++R VRSSA ED +SAAG ++I D
Sbjct: 875 --IISHLSPPEETIIFLKRIFPQDVRLIVRSSANVEDLAGMSAAGLYDSIPNVSLMDPCA 932
Query: 511 --RAVQKCWGSMFEFTSTYYRR-QNXXXXXXXXXXXXXXXXSPRVAGVMFTRHPDAGDPS 567
AV K W S++ + RR P ++ V+ T P DP
Sbjct: 933 FGAAVGKVWASLYTRRAILSRRAAGVYQRDATMAVLVQEILQPDLSFVLHTVCPADHDPK 992
Query: 568 RLLITANYGLGESVVSGT-VEPDTIIVKREPNGVLTIQKRELGSKTRRHVASSSGGVI-- 624
+ GLGE++ SGT P + + V T+ + H + + G +
Sbjct: 993 VVQAEVAPGLGETLASGTRGTPWRLSCNKFDGKVATLAFSNFSEEMVVHNSGPANGEVIR 1052
Query: 625 -TEDVPEKERSV-ACLNDTEVLKLARLGVVQEELWGAGRDIEWAISG 669
T D +K SV +LA +G E+ +G+ +D+E + G
Sbjct: 1053 LTVDYSKKPLSVDTTFRKQFGQRLAAIGQYLEQKFGSAQDVEGCLVG 1099
>03_04_0169 -
17959262-17959304,17959441-17959532,17959682-17959759,
17959938-17960075,17960174-17960302,17960556-17960685,
17960797-17960974,17961177-17961315,17961399-17961488,
17961633-17961794,17961966-17962130,17962250-17962387,
17962827-17963006,17963405-17963533,17963878-17964113,
17964233-17964395,17965260-17965628,17965724-17965828
Length = 887
Score = 40.7 bits (91), Expect = 0.005
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 365 TCTDYVGGKGASLALLASVQNDEGYRVPPGFCITTKALEKHLQLHTELKAAIQD 418
T D +GGKGA+LA +AS+ G VPPGF ++T+A +++ Q + A + D
Sbjct: 31 TMKDLLGGKGANLAEMASI----GLSVPPGFTVSTEACQQY-QAQKAMPAGLWD 79
>12_02_0995 +
25104303-25104486,25105164-25105275,25106466-25106554,
25106635-25106703,25106784-25106913,25107073-25107231,
25107364-25107736,25108070-25108182,25108429-25108624,
25108855-25109288,25109360-25109495,25109668-25111086
Length = 1137
Score = 31.9 bits (69), Expect = 2.3
Identities = 19/67 (28%), Positives = 29/67 (43%)
Query: 556 MFTRHPDAGDPSRLLITANYGLGESVVSGTVEPDTIIVKREPNGVLTIQKRELGSKTRRH 615
MF+ P P L+ L + + GTV+P+T+ RE + S
Sbjct: 883 MFSLSPSILSPEHLIGNDRSSLRQGLTFGTVKPETLNQWREESSQQASSSSSSSSNDHGA 942
Query: 616 VASSSGG 622
V+SS+GG
Sbjct: 943 VSSSNGG 949
>08_02_1589 + 28070286-28070525,28072224-28072565
Length = 193
Score = 31.9 bits (69), Expect = 2.3
Identities = 17/81 (20%), Positives = 36/81 (44%)
Query: 437 KVSSLFLALELSADIKKDILEYMQELRSKSAQLKDAQELRFAVRSSAVGEDSEALSAAGQ 496
+V + ++ D D E++ + +KD ++ AV ++A G D +A+G+
Sbjct: 43 EVQRMMAEIDTDGDGFIDFNEFISFCNANPGLMKDVAKVNSAVAAAAAGNDDIDAAASGK 102
Query: 497 NETILGCVTDDDVIRAVQKCW 517
++ T +D A C+
Sbjct: 103 DDIDAATATGNDEFAAAVACF 123
>12_02_0072 +
13218669-13218706,13218715-13218781,13220400-13220471,
13222107-13222182,13222309-13222943
Length = 295
Score = 31.5 bits (68), Expect = 3.0
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 470 KDAQELRFAVRSSAVGEDSEALSAAGQNETILGCVTDDDVIRAVQKC-WGSMFE 522
KD Q+ AV SS +G D+ ++ A + T++G V DV+ ++K W + E
Sbjct: 71 KDKQKAMKAV-SSVIGIDAISMDMASRKMTVIGTVDPVDVVSKLRKASWAAYIE 123
>11_01_0563 +
4423609-4423846,4424671-4426132,4428949-4429364,
4430555-4432052,4432199-4432217,4432469-4432675,
4432814-4433065
Length = 1363
Score = 31.5 bits (68), Expect = 3.0
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 12/115 (10%)
Query: 571 ITANYGLGESVVSGT------VEPDTIIVKREPNGVLTIQKRELGSKTRRHVA--SSSGG 622
I N LG+ V+SG V + + + NGVL + +++G+ ++ ++A + SG
Sbjct: 484 ILRNNLLGKFVLSGILPAPRGVPQIDVTFEFDANGVLHVSAKDMGTGSKNNIAITNHSGR 543
Query: 623 VITEDVPEKERSVACLNDTEVLKLARLGVVQEELWGAG---RDIEWAISGVKRWT 674
+ EDV R N T LA L ++ A RD+E + G WT
Sbjct: 544 LKKEDVERMAREARSYNRTR-SSLAFLNFIEPWKGDAAPLTRDVEPSQVGPTSWT 597
>01_06_0962 + 33402971-33403345,33403633-33403767,33408316-33408597
Length = 263
Score = 31.1 bits (67), Expect = 4.0
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 130 EKLAAQTL--ALEPWRDSQWSSMLGKWEEGSWLQWGTVQGRFQSFTAEGALDTTEYLQTR 187
+K+AA A P S+ S +L K+ EG WL W + F+ AEG L T+ +
Sbjct: 100 DKIAAAVFLCAFMPDHTSRPSHVLEKFIEGKWLDW--MDTEFKPQDAEGKLPTSMLFGPQ 157
Query: 188 GVKER 192
+ER
Sbjct: 158 IAQER 162
>08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-655735,
656209-656411,656837-657292,657718-657805,657917-658017,
658404-658631,659128-659445,659528-659812,660148-660711
Length = 1887
Score = 30.7 bits (66), Expect = 5.3
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 278 SLKVVLRIGEEGCTAYSGVPYQQELVYRAIVADIDGEAGSGILELGYLPKAIAQPSVRLT 337
SL+V+L + + G+ +QE Y +V G G + GY+ A+ +VRLT
Sbjct: 1704 SLQVLLALVWRAVSRARGLAPRQETAY-VVVVGCRGRVGG--ISSGYMGNAVVPGAVRLT 1760
Query: 338 PAPILKWLLKKDAGFVG-YCLSFEERA 363
I++ L A + Y SF+E A
Sbjct: 1761 AGEIMERGLGWTAWQLNKYVASFDEAA 1787
>11_04_0096 +
13435988-13436803,13436880-13437053,13437673-13437834,
13438548-13438690,13439059-13439134,13439231-13439403,
13439482-13439563,13439949-13440026,13440369-13440461,
13441026-13441187,13441225-13441530,13442265-13442369,
13443097-13443243
Length = 838
Score = 30.3 bits (65), Expect = 7.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 348 KDAGFVGYCLSFEERAATCTDYVGGKGASLA 378
K G +G C S E++ A C D V G+G + A
Sbjct: 444 KVQGIIGPCTSLEKKGALCADTVVGQGNTTA 474
>03_06_0215 +
32416097-32416236,32416727-32416851,32417092-32417138,
32417445-32417569,32417673-32417739,32417808-32417900,
32418024-32418093,32418193-32418398,32418489-32418677
Length = 353
Score = 30.3 bits (65), Expect = 7.0
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 206 FSITASARDGTAVVLRGVSYKKVLTQCLSGCVRLPDY-RVLTITDTDLIMSDF 257
F++ A G VLR + + LT LSGC L D R TD D + F
Sbjct: 298 FALAAEGEAGVRNVLRMMREEFELTMALSGCTSLADITRAHIYTDADRLARPF 350
>11_01_0705 -
5795976-5796051,5796450-5796518,5796632-5796780,
5796875-5797006,5797128-5797450,5798166-5798172,
5799126-5799180,5799685-5799740,5799862-5800029,
5800912-5801097,5801269-5801419,5801515-5801743,
5802277-5802532,5802793-5802894
Length = 652
Score = 29.9 bits (64), Expect = 9.3
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 822 KDLEVGT-NAKEPIELLESIAECEDLIGELTYNHSVTTVASTSSQII 867
K LE+ N +E++ I E ED+IGEL +H++ + S +++ I
Sbjct: 280 KCLEIDRENRPNILEIINQINEKEDIIGELPIDHALEKLPSYNNESI 326
>10_08_0733 - 20183271-20183725,20183860-20183935,20184202-20184210
Length = 179
Score = 29.9 bits (64), Expect = 9.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 481 SSAVGEDSEALSAAGQNETILGCVTDDDVIRAVQKCWGSMFE 522
S+ +G D ++ A Q T++G V +V+ ++K W + E
Sbjct: 25 SALIGIDELSMDMASQKMTVIGMVDPVNVVSKLRKSWAATIE 66
>10_01_0354 - 3887790-3890204
Length = 804
Score = 29.9 bits (64), Expect = 9.3
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 786 LIRRKPHWTDRIRLIHHMIMSILTSKWKLNDTVKKAKDLEVGTN-AKEPIELLESIAECE 844
L++RK W+ RIR +H + I SK T D VG ++EP S
Sbjct: 118 LLKRKKKWSSRIREVHEKLNEIAASKKDFGLT-----DWTVGGQCSEEPERESYSFVYQP 172
Query: 845 DLIGELTYNHSVTTV---ASTSSQIIAMTILMEGSAGNIEL 882
D+IG + + A+ I + +L G G EL
Sbjct: 173 DIIGRDDARDEIVSKILRAAEHHDIFVLPLLGLGGIGKTEL 213
>06_03_1178 + 28203466-28204590,28204745-28205652,28206189-28206258
Length = 700
Score = 29.9 bits (64), Expect = 9.3
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 550 PRVAGVMFTRHPDAGDPSRLLITANYGLGESVVSGTVEPDTIIVKREPNGVLTIQKRELG 609
PR+A + HP A D L+T G P +++ +P +LT Q+ LG
Sbjct: 496 PRIAAGLIIGHPAARDDISCLLTIGSPQNNKKSDGKKAPAQLMLFGKP--ILTEQQISLG 553
Query: 610 SKTRRHVASSSGGVITEDVPEKERS 634
V SS E+ K S
Sbjct: 554 DAASVDVKKSSSDGNAENTVNKSNS 578
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,339,798
Number of Sequences: 37544
Number of extensions: 1091008
Number of successful extensions: 2324
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2314
Number of HSP's gapped (non-prelim): 18
length of query: 882
length of database: 14,793,348
effective HSP length: 88
effective length of query: 794
effective length of database: 11,489,476
effective search space: 9122643944
effective search space used: 9122643944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)
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