GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002682-TA|BGIBMGA002682-PA|IPR002192|Pyruvate phosphate
dikinase, PEP/pyruvate-binding
         (882 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         25   2.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    25   2.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    25   2.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   4.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   8.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   8.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   8.2  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 241 DYRVLTITDTDLIMSDFCETPGGIPSAYTINIH 273
           ++R++     +LI++  CE P    + + I+IH
Sbjct: 399 NFRIMNANVNELILNTRCENPDNDRTPFKISIH 431


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 241 DYRVLTITDTDLIMSDFCETPGGIPSAYTINIH 273
           ++R++     +LI++  CE P    + + I+IH
Sbjct: 399 NFRIMNANVNELILNTRCENPDNDRTPFKISIH 431


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 241 DYRVLTITDTDLIMSDFCETPGGIPSAYTINIH 273
           ++R++     +LI++  CE P    + + I+IH
Sbjct: 399 NFRIMNANVNELILNTRCENPDNDRTPFKISIH 431


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 623 VITEDVPEKERSVACLNDTEVLKLARLGVVQEE 655
           +ITED   K+      ++T++ +  R+G+V+ +
Sbjct: 89  IITEDSSRKQTIDPLSSNTQITRKRRVGIVENQ 121


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 8.2
 Identities = 7/15 (46%), Positives = 13/15 (86%)

Query: 693 TTFGNTGEVLPKPVT 707
           +TFG++ E LP+P++
Sbjct: 52  STFGSSNEALPQPIS 66


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 8.2
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 353 VGYCLSFEERAATCTDYVGGKGASLALLASVQNDEGYRVPPGFCITTKALEKHLQLHTEL 412
           +G+ L   + A T     G   A LA+  S     G  +PPG C T     K L     L
Sbjct: 329 MGHGLQPPDLAGTSQGSAGLPSAILAMRLS-HPLHGNLLPPGVCYTCDVCGKTLSTKLTL 387

Query: 413 K 413
           K
Sbjct: 388 K 388


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.4 bits (48), Expect = 8.2
 Identities = 7/15 (46%), Positives = 13/15 (86%)

Query: 693 TTFGNTGEVLPKPVT 707
           +TFG++ E LP+P++
Sbjct: 52  STFGSSNEALPQPIS 66


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,403
Number of Sequences: 429
Number of extensions: 10065
Number of successful extensions: 25
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 8
length of query: 882
length of database: 140,377
effective HSP length: 64
effective length of query: 818
effective length of database: 112,921
effective search space: 92369378
effective search space used: 92369378
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)