Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002681-TA|BGIBMGA002681-PA|IPR008429|Cleft lip and
palate transmembrane 1
(429 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 33 0.10
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 31 0.41
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 28 2.9
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 27 3.8
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 27 5.1
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 27 6.7
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 27 6.7
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||... 26 8.8
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 32.7 bits (71), Expect = 0.10
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 61 QQPLEEGTSSNKVTKVHTLLNFDYRNPASMIRGDKFLPIIQHNVLKSRMSHLLLLNNSMT 120
++P+ SNK + + L+ NP+++ + D + I+ H +++LL +
Sbjct: 150 RKPIPTSRKSNKSDSLASALSQLDINPSNVNKFDGLINIVDHPYTAEEFANVLL---KLM 206
Query: 121 KVNVTVNVSPASYGIFRLALHVSLAFEHLHSLGFSEKDVDDVK 163
K + S + G + L + SL FE + + EKD VK
Sbjct: 207 KASTVKRKSYSHLGDYELVTNCSLLFEAIKTTFGLEKDSYVVK 249
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 30.7 bits (66), Expect = 0.41
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 282 AQADAEAMRYLSMLLYPLCVAGAIYSLVYEPHKS---WYSWALHSIVNGVYAFGFLFMLP 338
A D + M ++L+ P Y P + WY W HS++N Y P
Sbjct: 793 ASVDKQFMIGTALLISPALEPNTTYIQGIIPGDNDTIWYDWYNHSVINHDYDENITMSAP 852
Query: 339 QLFVNYRLRSVAALPWRAFMYKAFNTFIDDVFAFIITM 376
+VN +R +P + Y + + ++ ++ +I M
Sbjct: 853 LGYVNIAVRGGNIIPLQQPGYTTYES-RNNPYSLLIAM 889
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 27.9 bits (59), Expect = 2.9
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 277 NEKTTAQADAEAMRYLSMLLYPLCVAGAIYSLVYEPHKS---WYSWALHSIVNGVYAFGF 333
N+ T A D + M S+L+ P+ Y P + WY W H+ + Y
Sbjct: 763 NDPTLADVDRQFMVGDSLLVTPVLEPNVEYVQGVFPGDNSTVWYDWYNHTEIVRQYNENV 822
Query: 334 LFMLPQLFVNYRLRSVAALP 353
P +N +R + LP
Sbjct: 823 TLYAPLEHINVAIRGGSVLP 842
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 27.5 bits (58), Expect = 3.8
Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 277 NEKTTAQADAEAMRYLSMLLYPLCVAGAIYSLVYEPHKS---WYSWALHSIVNGVYAFGF 333
NE + A AD + M ++L+ P+ Y P + WY W H ++ +
Sbjct: 785 NEPSLANADRQFMVGSALLVTPVLEPNVDYVRGVFPGDNSTIWYDWYDHKVIYRQHNENI 844
Query: 334 LFMLPQLFVNYRLRSVAALP 353
P +N +R +P
Sbjct: 845 TLSAPLTHINVAIRGGNIIP 864
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 73 VTKVHTLLNFDYRNPASMIRGDKFLPIIQ-HNVLKSRMSHLLLLNNSMTKVNV 124
+ +H+LL F R PA+++ G+ + +I+ V + + H N T NV
Sbjct: 255 IEDIHSLLTFSKRAPAAVMLGNYYRKLIKIFLVCDNYLLHAAAWNRYFTFTNV 307
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 162 VKGIFADTNLYLLSATVLIASFHLLFDFLAFKNDVSFWR 200
V+ I+ Y+ S+T +I + + DF++ KND + +R
Sbjct: 37 VRSIYHGLKYYIYSSTSIIQVWQNIQDFISTKNDNAAFR 75
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 6.7
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 55 FYASLKQQPLEEGTS-SNKVTKVHTLLNFDYRNPASMIRGDKFLPIIQHNVLKSRMSHLL 113
FY S PLEE N++ V + N S I + F ++ +V +
Sbjct: 725 FYISRSDVPLEEEFQIPNELLAVDPVAESMQEN--SDIINEAF-GLVDPDVSDGKSRESS 781
Query: 114 LLNNSMTKVNVTVNVSPAS 132
LNNS T N TVN+ PAS
Sbjct: 782 SLNNS-TPFNPTVNIDPAS 799
>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 44 YLTSNPVQNLVFYASLKQQPLEEGTSSNK-VTKVHTLLNFDYRNP 87
Y NP++N LK++ EE T++NK K T N +NP
Sbjct: 276 YFCMNPLRNKSSALYLKRKAEEESTNNNKWAKKFSTSSNVLDKNP 320
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.327 0.137 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,952,888
Number of Sequences: 5004
Number of extensions: 81630
Number of successful extensions: 289
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 8
length of query: 429
length of database: 2,362,478
effective HSP length: 75
effective length of query: 354
effective length of database: 1,987,178
effective search space: 703461012
effective search space used: 703461012
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)
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