GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002681-TA|BGIBMGA002681-PA|IPR008429|Cleft lip and
palate transmembrane 1
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1048 - 21998214-21998413,21998507-21998674,21998758-219989...   297   1e-80
02_01_0690 - 5152224-5152386,5152490-5152687,5152815-5153014,515...    34   0.25 
02_05_0420 + 28821717-28821854,28821944-28822210,28822299-288225...    31   2.3  
09_06_0366 + 22596192-22596392,22599777-22599875,22599962-226004...    29   7.2  
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497...    29   7.2  

>04_03_1048 -
           21998214-21998413,21998507-21998674,21998758-21998977,
           21999571-21999761,21999869-21999962,22000257-22000500,
           22001314-22001411,22001509-22001600,22001695-22001809,
           22001890-22002036,22003031-22003255
          Length = 597

 Score =  297 bits (728), Expect = 1e-80
 Identities = 143/319 (44%), Positives = 207/319 (64%), Gaps = 5/319 (1%)

Query: 94  DKFLPIIQHNVLKSRMSHLLLLNNSMTKVNVTVNVSPASYGIFRLALHVSLAFEHLHSLG 153
           + + P +  N        L+ LN ++ ++ + + V P S   +++ L +  +F+   S G
Sbjct: 237 NNYYPTVFFNEFWLLRDKLIALNETVEELPLNLEVGPISMTKWQIFLQMEQSFQVHRSYG 296

Query: 154 -FSEKDVDDVKGIFADTNLYLLSATVLIASFHLLFDFLAFKNDVSFWRRKRSLAGLSART 212
              E + D++K +F + N Y L  T++++ FH LFDFLAFKND+ FW + +S+ GLSA++
Sbjct: 297 SMLEGEADELKRVFLEGNPYFLGLTMIVSLFHSLFDFLAFKNDIQFWNKNKSMEGLSAKS 356

Query: 213 VLWRAFSQFVIFMYLMDERTSLLVLIPAGISALIELWKVTKVLHLRV--SFKAWKLRVWR 270
           V+     Q +IF+YL+D  TS ++L  +GI   IE WK+ K +H+ +  S K   LR +R
Sbjct: 357 VVLNFVCQLIIFLYLLDNETSWMILGSSGIGVCIEFWKIGKAMHVEIDRSGKIPMLR-FR 415

Query: 271 DTSSDANEKTTAQADAEAMRYLSMLLYPLCVAGAIYSLVYEPHKSWYSWALHSIVNGVYA 330
           D  S A  KT  + DA AM+YL+ +L  L    +IYSL YE HKSWYSW L S+ + VY 
Sbjct: 416 DRESYAQNKTK-EYDAIAMKYLTYVLLFLVFCFSIYSLKYEKHKSWYSWILSSLTSCVYM 474

Query: 331 FGFLFMLPQLFVNYRLRSVAALPWRAFMYKAFNTFIDDVFAFIITMPTAHRMACFRDDLV 390
           FGF+ M PQLF+NY+L+SVA +PWR   YK  NT IDD+FAF+I MP  HR++ FRDD++
Sbjct: 475 FGFIMMCPQLFINYKLKSVAHMPWRQMTYKFLNTIIDDLFAFVIKMPMLHRLSVFRDDVI 534

Query: 391 FLVYLYQRWLYPVDKTRVD 409
           FL+YLYQRW+YPVDK RV+
Sbjct: 535 FLIYLYQRWVYPVDKKRVN 553


>02_01_0690 -
           5152224-5152386,5152490-5152687,5152815-5153014,
           5153122-5153223,5153414-5153550,5153688-5153798,
           5156092-5156344,5157954-5158052,5158449-5158739
          Length = 517

 Score = 33.9 bits (74), Expect = 0.25
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 165 IFADTNLYLLSATVLIASFHLLFDFLAFKNDVSFWRRKRSLAGL 208
           ++  T + LL++     SFHLLF ++ F+N +S  R K +L GL
Sbjct: 382 VYIPTIITLLNSVGTPRSFHLLFFWILFENVMSLHRTKATLIGL 425


>02_05_0420 +
           28821717-28821854,28821944-28822210,28822299-28822568,
           28822656-28823246,28823336-28823479
          Length = 469

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 85  RNPASMIRGDKFLPIIQHNVLKSRMSHLLLLNNSMTKVNVTVNVSPASYGIFRLALHVSL 144
           RNP++   GD+F+P    + +   M+H LL      K N     SP S  ++R  L   L
Sbjct: 39  RNPSAKCYGDRFIP--DRSAMDMDMAHYLLTEPKKDKENAA--ASP-SKEVYRRLLAEKL 93

Query: 145 AFEHLHSLGFSEKDVDDVKGIFADT 169
                  L F  K  +      ADT
Sbjct: 94  LNNRTRILAFRNKPPEPENVSAADT 118


>09_06_0366 +
           22596192-22596392,22599777-22599875,22599962-22600411,
           22600630-22601154
          Length = 424

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 165 IFADTNLYLLSATVLIASFHLLFDFLAFKNDVSFWRRKRSLAGLSART 212
           ++    + LL+A     S HLL  ++ F+N +S  R K +L GL   T
Sbjct: 284 LYVPAAITLLNAACTPRSCHLLIFWILFENVMSMHRTKATLIGLLEAT 331


>02_03_0390 +
           18448671-18448889,18449567-18449632,18449702-18449761,
           18449864-18449959,18452287-18452447,18452669-18452790,
           18452872-18453239,18453653-18453739,18453835-18453969,
           18454349-18454471,18454771-18454854,18455023-18455187,
           18455310-18455486,18455660-18455773,18455912-18456016,
           18457056-18457174,18457244-18457385,18457461-18457555,
           18457757-18457862,18458125-18458204,18458285-18458461,
           18459828-18459912,18460024-18460104,18460208-18460351,
           18460468-18460563,18460654-18460854,18461462-18461895,
           18462417-18462478,18462622-18462872,18462956-18463030,
           18463110-18463300,18463696-18463867,18463956-18464020,
           18464646-18464778,18464861-18464962,18465047-18465130,
           18465656-18465730,18465818-18465877,18465967-18466223,
           18466560-18466608,18466781-18466941,18467013-18467079,
           18467174-18467299,18467422-18467592,18468566-18468769,
           18469059-18469165,18469608-18469737,18469774-18469959,
           18470704-18470742
          Length = 2202

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 262 KAWKLRVWRDTSSDANEKTTAQADAEAMRYLSMLLYPLCVAGAIYSLVYEPHKSWYSWAL 321
           K+WK ++  +  ++ N     +A    + Y S+ L   C+  + Y  V      WYS  +
Sbjct: 826 KSWKGKL-AEAKANGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEM 884

Query: 322 HSIV 325
             +V
Sbjct: 885 AGVV 888


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,696,691
Number of Sequences: 37544
Number of extensions: 458705
Number of successful extensions: 1246
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1242
Number of HSP's gapped (non-prelim): 5
length of query: 429
length of database: 14,793,348
effective HSP length: 84
effective length of query: 345
effective length of database: 11,639,652
effective search space: 4015679940
effective search space used: 4015679940
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 61 (28.7 bits)