GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002681-TA|BGIBMGA002681-PA|IPR008429|Cleft lip and
palate transmembrane 1
         (429 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    26   0.70 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   6.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   6.5  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 25.8 bits (54), Expect = 0.70
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 357 FMYKAFNTFIDDVFAFIITMPTAHRMACFRDDLVFLVYLYQR 398
           F   A N   +D  A ++  P+A+R    +DD   LV+LY R
Sbjct: 220 FRIDAINHMFED--ARLLDEPSANRTDLSKDDYESLVHLYTR 259


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 311 EPHKSWYSWALHSIVNG 327
           EP+ ++Y W    IVNG
Sbjct: 140 EPYNNYYIWHPGKIVNG 156


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 311 EPHKSWYSWALHSIVNG 327
           EP+ ++Y W    IVNG
Sbjct: 140 EPYNNYYIWHPGKIVNG 156


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.137    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,274
Number of Sequences: 429
Number of extensions: 4912
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 429
length of database: 140,377
effective HSP length: 60
effective length of query: 369
effective length of database: 114,637
effective search space: 42301053
effective search space used: 42301053
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)