Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002680-TA|BGIBMGA002680-PA|undefined
(361 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ... 32 0.11
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 31 0.33
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 30 0.58
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 29 1.0
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 28 2.4
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 27 3.1
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom... 27 3.1
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 27 4.1
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 27 4.1
SPBC1347.09 |||hexaprenyldihydroxybenzoate methyltransferase|Sch... 27 4.1
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa... 27 4.1
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar... 27 5.4
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 27 5.4
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 7.2
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 26 7.2
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 26 7.2
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ... 26 7.2
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 9.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 9.5
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 9.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 9.5
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 9.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 9.5
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual 26 9.5
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M... 26 9.5
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2... 26 9.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 9.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 9.5
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 9.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 9.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 9.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 9.5
>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 311
Score = 32.3 bits (70), Expect = 0.11
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 289 DNELPDYKEDGVDLEMQMADRIEKKNIRLLENSLSRWQVLVQSVAGGNVELDKNT 343
+ EL +YK +++ + + + ++LLEN L L +++ +VE DKNT
Sbjct: 2 EKELEEYKSQLALVQISLQKTPQNEELQLLENDLKELISLTENLLQESVENDKNT 56
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 30.7 bits (66), Expect = 0.33
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 241 PTRTSKTLMAHWQLLKQYQLLPDQTVLPLPKNQNDKVLTFSDAEETMNDNELPDYKEDGV 300
P S L H+Q+ K Y P +T+ P +++ K+L E +N + L + K++G
Sbjct: 23 PDNNSSFLSNHFQVRKSYSQAPARTLKPF-ASEDIKILLL----ENVNQSALSNLKDEGY 77
Query: 301 DLE 303
+E
Sbjct: 78 QVE 80
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 29.9 bits (64), Expect = 0.58
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 271 KNQNDKVLTFSDAEETMNDNELPDYKEDGVDLEMQMADRIEKKN 314
K Q+D +LT D+E+ D DY D VD EM ++KK+
Sbjct: 42 KVQDDFILTIDDSED---DIHYDDYDADAVDEEMPSNVELKKKS 82
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 29.1 bits (62), Expect = 1.0
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 144 VQQTNDLRIVHRGIKFSCRFTVSELQSRWYALLYNAEISRVAVAAMRNLHPDLVAAVQQQ 203
+QQ + I ++G F R +SE + +Y LL I+ VA+A + P+L A +Q
Sbjct: 1113 IQQVSTFAINYQGRPF--REALSENKGMYYGLL---GIAFVAIAGVTEFSPELNAKLQLV 1167
Query: 204 ALYSTSEEELLGTL 217
+ + +LL T+
Sbjct: 1168 KMAYNFQIQLLATM 1181
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 190 RNLHPDLVAAVQQQALYSTSEEELLGTLSSTSHPTLEKFQELLDQNPHVF 239
R+ H + +LY +++ LL S TLEK++++ QNP+ F
Sbjct: 263 RSFHTCNFSLKSAASLYCDTQDILLNVNSQNLTSTLEKYKKMHLQNPNNF 312
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 101 HSSKVSGIMSGGKKARRKGHLSQLSTKDLGRWKPTDDL 138
HSSK S I SGG + + H L T + + +DL
Sbjct: 1003 HSSKESDIPSGGVFTKYRNHFGNLMTSEETKAPDNNDL 1040
>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 304
Score = 27.5 bits (58), Expect = 3.1
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 217 LSSTSHPTLEKFQELLDQNPHVFYPTRTSKTLM-------AHWQLLKQYQLLPDQTVLPL 269
++S+S L+ NP+ P + + ++ AH LL+ Q + D+ L
Sbjct: 169 IASSSMAATNLSNSLVRINPNTENPAKNKQIMVYYVDCKRAHRSLLRYIQAIQDEMWLAN 228
Query: 270 PKNQNDKVLTFSDA-EETMNDNELPDYKED 298
ND+++T DA +E ++N DY D
Sbjct: 229 LLKANDEIVTAIDAFKEKCSENS--DYSSD 256
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 27.1 bits (57), Expect = 4.1
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 256 KQYQLLPDQTVLPLPKNQNDKVLTFSDAEETMNDNELPDYKEDGVDLEMQMADRIEKKNI 315
K+ QL + + K++ D LT SDAE+ N + ++DG+ E D I++ +
Sbjct: 286 KEAQLSKLMKDMHVSKDKEDVGLTVSDAEDEYNGELVDPDEDDGLTAE-DREDMIKQYRV 344
Query: 316 RL 317
L
Sbjct: 345 AL 346
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 27.1 bits (57), Expect = 4.1
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 232 LDQNPHVFYPTRTSKTLMAHWQLLKQYQLL 261
+ QN +F+ +T + + HW+ L++ +L
Sbjct: 583 MQQNADLFFKRKTLRVVFEHWRYLRETNML 612
>SPBC1347.09 |||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 284
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 265 TVLPLPKNQNDKVLTFSDAEETMNDNELPDYKED 298
+ L + K + K+L F D ET ++LP Y +D
Sbjct: 24 STLAISKVISSKILQFEDNSETSLRHDLPKYDQD 57
>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 4.1
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 262 PDQTVLPLPKNQNDKVLTFSDAEETMNDNELPDYKEDGVDLEMQMADRIEKK 313
P Q LP+ K QNDK SD E + N+ E K+ + ++ + +K+
Sbjct: 275 PSQERLPVEKEQNDK----SDEEGSNNEQEEKQDKKQSTNRDLCRKESCKKE 322
>SPAC24C9.09 |||mitochondrial threonine-tRNA
ligase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 26.6 bits (56), Expect = 5.4
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 248 LMAHWQLLKQYQLLPDQTVLPLPKNQNDKVLTFS-DAEETMNDNELPDYKEDGVDLEMQM 306
L HW + L P V+ LP NQ D++LT++ ++ +++ E+ + + ++
Sbjct: 348 LNGHWP----FWLSPRHAVI-LPVNQTDRILTYAKQVQKELSNQEVNESEFLPLNKNTYY 402
Query: 307 AD-RIEKKNI--RLLENSLSRWQVLVQSVAGGNVELDKNTLAV 346
D E ++I RL E+ L + + G E+DK L+V
Sbjct: 403 VDINAEAQSIGKRLRESRLLNYN---YEIVIGEDEVDKEILSV 442
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 26.6 bits (56), Expect = 5.4
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 309 RIEKKNIRLLENSLSRWQVLVQSVAGGNVEL--DKNTLAVLRGRLVRYLMRS 358
R + KN+ ++ +S SRW ++ ++G E+ D A L +L + R+
Sbjct: 346 RDQGKNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGAKLASFYERA 397
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 26.2 bits (55), Expect = 7.2
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 48 ELVEYSLGLPGASVGKGDKRMRTQSYTSSSLPDLPIPANVPVISNNTTHERRRH 101
E+ E GL VGKGD + S + + LP P+ V N T H R+
Sbjct: 52 EIWETRDGLFEEPVGKGDSHLNHTSVMTGNWNILPYPSFGKVSPNVTWHTTLRN 105
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/48 (25%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 75 SSSLPDLPIPANVPVISNNTTHERRRHSSKVSGIMSGGKKARRKGHLS 122
+SS+P+ P+ + +SN +T E +++ SG+ + +K++ ++S
Sbjct: 242 TSSVPETPVGVSAANVSNEST-ELATSATQQSGLANNVEKSQTPSYMS 288
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 26.2 bits (55), Expect = 7.2
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 278 LTFSDAEETMNDNELPD--YKEDGVDLEM-QMADRIEKKNIRLL 318
LT S TM +NELPD +K + V +++ + +I K RLL
Sbjct: 535 LTLSSFSNTMFENELPDSFFKVEDVKVDIHHIKLKIRKSRHRLL 578
>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 7.2
Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 1/106 (0%)
Query: 145 QQTNDLRIVHRGIKFSCRFTVSELQSRWYALLYNAEISRVAVAAMRNLHPDLVAAVQQQA 204
Q N ++ S + TV LYN S +A + +A
Sbjct: 226 QIPNQIQQASAATTASSKMTVDTNLGTAQPSLYNTPSSDYELANQEKPADSMASAASLNT 285
Query: 205 LYSTSEEELLGTLSSTSHPTLEKFQELLDQNPHVFYPTRTSKTLMA 250
S+++ L + S+P EKFQ + NP F S MA
Sbjct: 286 PLSSNDHSL-NPHAHGSYPMYEKFQPIQHPNPGSFTTHLDSNASMA 330
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 9.5
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 203 QALYSTSEEELLGTLSSTSH------PTLEKFQELLDQNPHVFYPTRTSK---TLMAHWQ 253
Q YS S++E+L + S H T+E F+ L D + T S+ +A WQ
Sbjct: 746 QLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQ 805
Query: 254 LLKQ 257
L Q
Sbjct: 806 LFLQ 809
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 9.5
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 203 QALYSTSEEELLGTLSSTSH------PTLEKFQELLDQNPHVFYPTRTSK---TLMAHWQ 253
Q YS S++E+L + S H T+E F+ L D + T S+ +A WQ
Sbjct: 746 QLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQ 805
Query: 254 LLKQ 257
L Q
Sbjct: 806 LFLQ 809
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 9.5
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 203 QALYSTSEEELLGTLSSTSH------PTLEKFQELLDQNPHVFYPTRTSK---TLMAHWQ 253
Q YS S++E+L + S H T+E F+ L D + T S+ +A WQ
Sbjct: 746 QLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQ 805
Query: 254 LLKQ 257
L Q
Sbjct: 806 LFLQ 809
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 9.5
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 203 QALYSTSEEELLGTLSSTSH------PTLEKFQELLDQNPHVFYPTRTSK---TLMAHWQ 253
Q YS S++E+L + S H T+E F+ L D + T S+ +A WQ
Sbjct: 746 QLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQ 805
Query: 254 LLKQ 257
L Q
Sbjct: 806 LFLQ 809
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 9.5
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 203 QALYSTSEEELLGTLSSTSH------PTLEKFQELLDQNPHVFYPTRTSK---TLMAHWQ 253
Q YS S++E+L + S H T+E F+ L D + T S+ +A WQ
Sbjct: 746 QLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQ 805
Query: 254 LLKQ 257
L Q
Sbjct: 806 LFLQ 809
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 9.5
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 203 QALYSTSEEELLGTLSSTSH------PTLEKFQELLDQNPHVFYPTRTSK---TLMAHWQ 253
Q YS S++E+L + S H T+E F+ L D + T S+ +A WQ
Sbjct: 746 QLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQ 805
Query: 254 LLKQ 257
L Q
Sbjct: 806 LFLQ 809
>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 9.5
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 226 EKFQELLDQNPHVF-YPTR-TSKTLMAHWQLLKQYQLLPDQTVLPLP 270
E+ +L + H+ YP+ T KT AHW++L + + L Q + P
Sbjct: 163 EQAIKLRNMGAHIITYPSAFTEKTGAAHWEVLLRARALDSQCYVIAP 209
>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 214
Score = 25.8 bits (54), Expect = 9.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 273 QNDKVLTFSDAEETMNDNELPDYKEDGVDLEMQMADRIEKKNIRLLEN 320
++D+ F + +ET D D D +Q +R+E+ + RLLE+
Sbjct: 87 KSDRKALFGNRDETSGDYIASDQDYDQRTRLLQGTNRLEQSSQRLLES 134
>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 9.5
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 86 NVPVISNNTTHERRRHSSKVSGIMSGGKKARRKGH 120
N+ + E++ +++G+MSG K+A + H
Sbjct: 349 NISLAGKTNFFEKKVSDYQIAGVMSGTKRAEKDDH 383
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 9.5
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 203 QALYSTSEEELLGTLSSTSH------PTLEKFQELLDQNPHVFYPTRTSK---TLMAHWQ 253
Q YS S++E+L + S H T+E F+ L D + T S+ +A WQ
Sbjct: 746 QLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQ 805
Query: 254 LLKQ 257
L Q
Sbjct: 806 LFLQ 809
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 9.5
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 203 QALYSTSEEELLGTLSSTSH------PTLEKFQELLDQNPHVFYPTRTSK---TLMAHWQ 253
Q YS S++E+L + S H T+E F+ L D + T S+ +A WQ
Sbjct: 746 QLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQ 805
Query: 254 LLKQ 257
L Q
Sbjct: 806 LFLQ 809
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 9.5
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 203 QALYSTSEEELLGTLSSTSH------PTLEKFQELLDQNPHVFYPTRTSK---TLMAHWQ 253
Q YS S++E+L + S H T+E F+ L D + T S+ +A WQ
Sbjct: 746 QLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQ 805
Query: 254 LLKQ 257
L Q
Sbjct: 806 LFLQ 809
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 9.5
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 203 QALYSTSEEELLGTLSSTSH------PTLEKFQELLDQNPHVFYPTRTSK---TLMAHWQ 253
Q YS S++E+L + S H T+E F+ L D + T S+ +A WQ
Sbjct: 746 QLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQ 805
Query: 254 LLKQ 257
L Q
Sbjct: 806 LFLQ 809
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 9.5
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 203 QALYSTSEEELLGTLSSTSH------PTLEKFQELLDQNPHVFYPTRTSK---TLMAHWQ 253
Q YS S++E+L + S H T+E F+ L D + T S+ +A WQ
Sbjct: 746 QLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQ 805
Query: 254 LLKQ 257
L Q
Sbjct: 806 LFLQ 809
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 308 DRIEKKNIRLLENSLSRWQVLVQSVAGGNVELDKNTLAVLR 348
D + N LL++ S+W+ L++S ++L+ N +LR
Sbjct: 1202 DAFSEFNFSLLKDITSKWKDLLESFECRRLKLENNKDEILR 1242
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.131 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,542,426
Number of Sequences: 5004
Number of extensions: 61371
Number of successful extensions: 245
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 34
length of query: 361
length of database: 2,362,478
effective HSP length: 74
effective length of query: 287
effective length of database: 1,992,182
effective search space: 571756234
effective search space used: 571756234
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)
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