Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002680-TA|BGIBMGA002680-PA|undefined
(361 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48113| Best HMM Match : No HMM Matches (HMM E-Value=.) 201 6e-52
SB_25491| Best HMM Match : Peptidase_M50 (HMM E-Value=2.2) 36 0.051
SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05) 33 0.36
SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088) 33 0.36
SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0) 33 0.36
SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05) 33 0.36
SB_16221| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_25667| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.9
SB_49303| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0037) 30 2.5
SB_34529| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_6253| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0) 29 7.8
>SB_48113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 201 bits (491), Expect = 6e-52
Identities = 122/270 (45%), Positives = 166/270 (61%), Gaps = 27/270 (10%)
Query: 114 KARRKGHLSQLSTKDLGRWKPTDDLALILGVQQ------TNDLRIV------HRGIKFS- 160
K + K ++ +KD GRW+PTDDLALI VQQ T L ++ H G +
Sbjct: 70 KEKDKRPMTPQVSKDFGRWRPTDDLALITAVQQCHITMITQALMVISGHEEDHDGNDDAD 129
Query: 161 CRFTVSELQSRWYALLYN-AEISRVAVAAMRNLHPDLVAAVQQQALYSTSEEELLGTLSS 219
C F + LLY + R+A AM+ L PD+VAA Q AL+STSEE LL + S
Sbjct: 130 CGFMIKSCYGSLKLLLYYMTDHFRLATMAMKQLPPDIVAAAQNNALWSTSEETLLANVRS 189
Query: 220 TSHPTLEKFQELLDQNPHVFYPTRTSKTLMAHWQLLKQYQLLPDQTVLPLPKNQNDKVLT 279
+S +LE F +LLD +P VF+ R++K+L HW L++QYQLL DQ+V P +++ ++
Sbjct: 190 SSPASLEIFHKLLDNHPSVFHQCRSAKSLRNHWLLMRQYQLLADQSV---PAGESN--MS 244
Query: 280 FSDAEETMNDNELPDYKEDGVDLEMQMADRIEKKNIRLLENSLSRWQVLVQSVAG-GNV- 337
FSDAEE +ND EL + K+DG++ E+ +ADR K+ IR LE + +WQV+V + G GN
Sbjct: 245 FSDAEEQINDAELLEAKDDGLEQELSVADRRHKREIRQLEEEIPKWQVVVDELCGQGNTT 304
Query: 338 ------ELDKNTLAVLRGRLVRYLMRSREV 361
E D TLAVLRGRLVRYLMRSRE+
Sbjct: 305 SGASANEFDLQTLAVLRGRLVRYLMRSREI 334
>SB_25491| Best HMM Match : Peptidase_M50 (HMM E-Value=2.2)
Length = 771
Score = 35.9 bits (79), Expect = 0.051
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 259 QLLPDQTVLPLPKNQNDKVLTFSDAEETMNDNELPDYKEDGVDLEMQMADRIEKKN 314
+L D ++ L K ++T S A ET+ DN+ PDY+E+ D+ + + D E +
Sbjct: 39 RLSDDPNIIRLAKEHQVDIVTCSSAIETLIDNQTPDYREEW-DIPIHVRDLQENSS 93
>SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1360
Score = 33.5 bits (73), Expect = 0.27
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 198 AAVQQQALYSTSEEELLGTLSSTSHPTLEKFQELL-DQNPHVFYPTRTSKTLMAHWQLLK 256
A++ Q+ L + + L + +T+ P+ K +LL P+V T T+ L H ++
Sbjct: 339 ASLHQKFLQTIDDFSLSQHVKTTTRPSSGKTLDLLLTTYPNVIVNTSTASGLSDHLAVIF 398
Query: 257 QYQLLPDQTVLPLPKNQNDKVLTFSDAEETMNDN 290
+ +L P +++ P K K F D + M+D+
Sbjct: 399 EVKLKPSRSLKPPHKVYQYKKANFPDLCKFMSDS 432
>SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05)
Length = 275
Score = 33.1 bits (72), Expect = 0.36
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 198 AAVQQQALYSTSEEELLGTLSSTSHPTLEKFQELL-DQNPHVFYPTRTSKTLMAHWQLLK 256
A++ Q+ L + + L + +T+ P+ K +LL P+V T T+ L H ++
Sbjct: 162 ASLHQKFLQTIDDFSLSQHVKTTTRPSSGKTLDLLLTTYPNVIVNTSTASGLSDHLAVIF 221
Query: 257 QYQLLPDQTVLPLPKNQNDKVLTFSDAEETMNDN 290
+ L P +++ P K K F D + M+D+
Sbjct: 222 EVNLKPSRSLKPPHKVYQYKKANFPDLCKFMSDS 255
>SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088)
Length = 321
Score = 33.1 bits (72), Expect = 0.36
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 198 AAVQQQALYSTSEEELLGTLSSTSHPTLEKFQELL-DQNPHVFYPTRTSKTLMAHWQLLK 256
A++ Q+ L + + L + +T+ P+ K +LL P+V T T+ L H ++
Sbjct: 114 ASLHQKFLQTIDDFSLSQHVKTTTRPSSGKTLDLLLTTYPNVIVNTSTASGLSDHLAVIF 173
Query: 257 QYQLLPDQTVLPLPKNQNDKVLTFSDAEETMNDN 290
+ L P +++ P K K F D + M+D+
Sbjct: 174 EVNLKPSRSLKPPHKVYQYKKANFPDLCKFMSDS 207
>SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 801
Score = 33.1 bits (72), Expect = 0.36
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 198 AAVQQQALYSTSEEELLGTLSSTSHPTLEKFQELL-DQNPHVFYPTRTSKTLMAHWQLLK 256
A++ Q+ L + + L + +T+ P+ K +LL P+V T T+ L H ++
Sbjct: 56 ASLHQKFLQTIDDFSLSQHVKTTTRPSSGKTLDLLLTTYPNVIVNTSTASGLSDHLAVIF 115
Query: 257 QYQLLPDQTVLPLPKNQNDKVLTFSDAEETMNDN 290
+ L P +++ P K K F D + M+D+
Sbjct: 116 EVNLKPSRSLKPPHKVYQYKKANFPDLCKFMSDS 149
>SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05)
Length = 273
Score = 33.1 bits (72), Expect = 0.36
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 198 AAVQQQALYSTSEEELLGTLSSTSHPTLEKFQELL-DQNPHVFYPTRTSKTLMAHWQLLK 256
A++ Q+ L + + L + +T+ P+ K +LL P+V T T+ L H ++
Sbjct: 162 ASLHQKFLQTIDDFSLSQHVKTTTRPSSGKTLDLLLTTYPNVIVNTSTASGLSDHLAVIF 221
Query: 257 QYQLLPDQTVLPLPKNQNDKVLTFSDAEETMNDN 290
+ L P +++ P K K F D + M+D+
Sbjct: 222 EVNLKPSRSLKPPHKVYQYKKANFPDLCKFMSDS 255
>SB_16221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 834
Score = 31.5 bits (68), Expect = 1.1
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 9/138 (6%)
Query: 90 ISNNTTHERRRHSSKVSGIMSGGKKARRKGHLSQLSTKDLGRWKPTDDLALILGVQQTND 149
+ +N R+ +S+ S S R + + + S+ L R + G+ T+
Sbjct: 260 LPDNAFLTHRKPASRPSSAESDSGSERSEDNSPRTSSSRLSRRLDPCMTFFLCGLWVTH- 318
Query: 150 LRIVHRGIKFSCRFTVSELQSRWYALL---YNAEISRVAV-AAMRNLHPDLVAAVQQQAL 205
+R VH G + S R T + RW ++ + SR + R H V + +L
Sbjct: 319 MRDVHSGTQCSTRMTHIPIACRWDCVILSQHTIHFSRAFLRVTKRAFHSPYVMTMPGSSL 378
Query: 206 YSTSEEELLGTLSSTSHP 223
Y+ S T SS +HP
Sbjct: 379 YTPSSH----TSSSRTHP 392
>SB_25667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 30.7 bits (66), Expect = 1.9
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 6/109 (5%)
Query: 212 ELLGTLSSTSHPTLEKFQELLDQNPHVFYPTRTSKTLMAHWQLL-KQYQLLPDQTVLPLP 270
EL S S P+ + + P Y K W L K ++ PDQ L P
Sbjct: 29 ELRMNTGSPSKPSDTRIADTTTTKPFPGYQPSWVKVKYGAWYLNPKTWKARPDQEQLLDP 88
Query: 271 KNQNDKVLTFSDAEETMNDNELPDYKEDGVDLEMQMADRIEKKNIRLLE 319
K Q DK L+ + + D L G L + D +++KN R+ E
Sbjct: 89 KEQQDKTLSEAKVKSQKLDAVLATM--HGAKL---LKDFVDRKNTRVPE 132
>SB_49303| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0037)
Length = 722
Score = 30.3 bits (65), Expect = 2.5
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 198 AAVQQQALYSTSEEELLGTLSSTSHPTLEKFQELL-DQNPHVFYPTRTSKTLMAHWQLLK 256
A++ Q+ L + + L + +T+ P+ K +LL P+V T T H ++
Sbjct: 515 ASLHQKFLQTIDDFSLSQHVKTTTRPSSGKTLDLLLTTYPNVIVNTSTVSGFSDHLAVIF 574
Query: 257 QYQLLPDQTVLPLPKNQNDKVLTFSDAEETMNDN 290
+ L P +++ P K K F D + M+D+
Sbjct: 575 EVNLKPSRSLKPPHKVYQYKKANFPDLCKFMSDS 608
>SB_34529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 29.5 bits (63), Expect = 4.4
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 97 ERRRHSSKVSGIMSG----GKKARRKGHLSQLSTKDLGRWKPTDD 137
E+R+ + G MS G+++RRK H LS ++ GR + D
Sbjct: 48 EKRKREKRTRGEMSSYEEEGRRSRRKSHKHSLSVEETGRRRMRHD 92
>SB_6253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 29.1 bits (62), Expect = 5.9
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 283 AEETMNDNELPDYKEDGVDLEMQMADRIEKKNIRLLENSLSRWQVLVQSVAGGNVEL 339
AE+ +D L Y++D +D A KKN RL RW V +A ++EL
Sbjct: 74 AEKERHDKALEKYQQDYMD-----ATNSGKKNPRLASGKCRRWVVGFGDIANRSLEL 125
>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 1997
Score = 28.7 bits (61), Expect = 7.8
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 97 ERRRHSSKVSGIMSGGKKARRKGHLSQLST-KDLGRWKPTDDL 138
++ R ++ SG+MSGG+ A R+ + LST K R+ T +L
Sbjct: 1954 QKARGRARTSGVMSGGRAASREVPRTFLSTRKTSDRYSSTPNL 1996
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.131 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,928,519
Number of Sequences: 59808
Number of extensions: 417285
Number of successful extensions: 1207
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1201
Number of HSP's gapped (non-prelim): 14
length of query: 361
length of database: 16,821,457
effective HSP length: 83
effective length of query: 278
effective length of database: 11,857,393
effective search space: 3296355254
effective search space used: 3296355254
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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