GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002679-TA|BGIBMGA002679-PA|IPR000387|Tyrosine specific
protein phosphatase and dual specificity protein phosphatase,
IPR000340|Dual specificity protein phosphatase
         (146 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    57   1e-09
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    35   0.006
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    33   0.013
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    26   2.0  

>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 56.8 bits (131), Expect = 1e-09
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 45  PGLRYKGFQLMDLPTTDISKYFHIAANFIDEGVSSGGRVLVHCMIGVSRSATCALAFLMI 104
           P  ++   Q+ D  + +I +YF  +  FI   +S   +VLVHC  G+SRS T   A+LM 
Sbjct: 89  PEQQHLWLQIEDSSSQNILQYFEKSNKFIAFALSKNAKVLVHCFAGISRSVTLVAAYLMK 148

Query: 105 KRGMSLTEALCTVRARRD-IHPNDGF 129
           +   +  EAL  +  RR  I PN  F
Sbjct: 149 ENNWNTEEALSHINERRSGISPNANF 174


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 34.7 bits (76), Expect = 0.006
 Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)

Query: 82  RVLVHCMIGVSRSATCALAFLMIKRGMSLTEALCTVRARRD-IHPN 126
           +VL++C +G+SRSA   +AF+M    +++++A   V+ R   I PN
Sbjct: 153 KVLINCQMGISRSACLMIAFIMKTLNLNVSDAYEYVKERSPWIGPN 198


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 33.5 bits (73), Expect = 0.013
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 46  GLRYKGFQLMDLPTTDISKYFHIAANFID--EGVSSGGRVLVHCMIGVSRSATCALAFLM 103
           G+R+K     D    ++S    +   FID  E V   G + VHC  G+ R+     A+L+
Sbjct: 247 GIRHKEMYFEDGTVPELS----LVKEFIDLTEEVEEDGVIAVHCKAGLGRTGCLIGAYLI 302

Query: 104 IKRGMSLTEALCTVRARR 121
            K   +  E +  +R  R
Sbjct: 303 YKHCFTANEVIAYMRIMR 320


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 102 LMIKRGMSLTEALCTVRARRDIHPN 126
           L ++RG  L E  CT ++  DI P+
Sbjct: 352 LTVQRGSELVELTCTAQSTHDIAPD 376


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.139    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,766
Number of Sequences: 5004
Number of extensions: 20373
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 4
length of query: 146
length of database: 2,362,478
effective HSP length: 67
effective length of query: 79
effective length of database: 2,027,210
effective search space: 160149590
effective search space used: 160149590
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 50 (24.2 bits)