GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002679-TA|BGIBMGA002679-PA|IPR000387|Tyrosine specific
protein phosphatase and dual specificity protein phosphatase,
IPR000340|Dual specificity protein phosphatase
         (146 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)                  93   8e-20
SB_10701| Best HMM Match : DSPc (HMM E-Value=0)                        71   4e-13
SB_59355| Best HMM Match : No HMM Matches (HMM E-Value=.)              70   7e-13
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   6e-12
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)                  56   2e-08
SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   3e-07
SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)                    50   8e-07
SB_12537| Best HMM Match : DSPc (HMM E-Value=1.3e-09)                  37   0.006
SB_33732| Best HMM Match : Pkinase (HMM E-Value=9e-10)                 36   0.018
SB_10767| Best HMM Match : DSPc (HMM E-Value=2.5e-07)                  34   0.041
SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.12 
SB_225| Best HMM Match : DSPc (HMM E-Value=8.6e-05)                    31   0.50 
SB_33267| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-10)          30   0.66 
SB_44472| Best HMM Match : Y_phosphatase (HMM E-Value=0)               29   2.0  
SB_40495| Best HMM Match : Y_phosphatase (HMM E-Value=2.8e-06)         27   8.2  

>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
          Length = 550

 Score = 93.1 bits (221), Expect = 8e-20
 Identities = 54/131 (41%), Positives = 80/131 (61%), Gaps = 8/131 (6%)

Query: 5   SVAAKDKAFLRRMGINYVLNTAEG-KRYTQVDTDHLYYRDCPGLRYKGFQLMDLPTTDIS 63
           +V A ++  L  +G+ +VLN A+G KR + V+TD  +Y+   G+ + G    D+    ++
Sbjct: 407 AVTAMEEDQLVALGVTHVLNAAQGTKRLSHVNTDASFYKS--GIIFHGIPATDVFMFKLN 464

Query: 64  KYFHIAANFIDEGVSS-----GGRVLVHCMIGVSRSATCALAFLMIKRGMSLTEALCTVR 118
           KYF  AA+FI   V +      GRV VHC  G+SRSAT  LA+L+  + M LT AL TVR
Sbjct: 465 KYFDEAADFIASAVGTKNCPKNGRVYVHCKEGISRSATLVLAYLIKHQQMGLTNALRTVR 524

Query: 119 ARRDIHPNDGF 129
           ++R ++PN GF
Sbjct: 525 SKRMVYPNMGF 535


>SB_10701| Best HMM Match : DSPc (HMM E-Value=0)
          Length = 365

 Score = 70.9 bits (166), Expect = 4e-13
 Identities = 47/123 (38%), Positives = 63/123 (51%), Gaps = 11/123 (8%)

Query: 8   AKDKAFLRRMGINYVLNTAEGKRYTQVDTDHLYYRDCPGLRYKGFQLMDLPTTDISKYFH 67
           A  +  L+R+GI+ ++N +     T  D+            YK   + D    DI  +F 
Sbjct: 194 ASRRDVLKRLGISAIVNVSRNIPNTFEDS----------FTYKTIPVDDTYNADIGVWFE 243

Query: 68  IAANFIDEGVSSGGRVLVHCMIGVSRSATCALAFLMIKRGMSLTEALCTVRARRD-IHPN 126
            AA FID   +SGGRVLVHC  G+SRSAT  LA+L+ +    L EA   V+ RR  I PN
Sbjct: 244 EAAGFIDSVKASGGRVLVHCQAGISRSATICLAYLISRLNFRLDEAYEYVKKRRSVISPN 303

Query: 127 DGF 129
             F
Sbjct: 304 FNF 306


>SB_59355| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 70.1 bits (164), Expect = 7e-13
 Identities = 47/123 (38%), Positives = 66/123 (53%), Gaps = 9/123 (7%)

Query: 8   AKDKAFLRRMGINYVLNTAEGKRYTQVDTDHLYYRDCPGLRYKGFQLMDLPTTDISKYFH 67
           A D+  + R+ I ++LN       T V  +  ++ +   + YK  Q+ D    DI ++F 
Sbjct: 33  AADEDLIDRLAIKFILNL------TPVCPN--FFSEREDIIYKRIQINDSYQEDIGQHFD 84

Query: 68  IAANFIDEGVSSGGRVLVHCMIGVSRSATCALAFLMIKRGMSLTEALCTVRARR-DIHPN 126
            A  FIDE  S G  VLVHC  GVSRSAT  +A++M   G+SL EA   V+ +R  I PN
Sbjct: 85  EAIAFIDEARSRGSSVLVHCHAGVSRSATVTVAYVMQHLGLSLNEAYQFVKEKRPTISPN 144

Query: 127 DGF 129
             F
Sbjct: 145 LNF 147


>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 828

 Score = 66.9 bits (156), Expect = 6e-12
 Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 47  LRYKGFQLMDLPTTDISKYFHIAANFIDEGVSSGGRVLVHCMIGVSRSATCALAFLMIKR 106
           + Y   QL D+P T +  +F     F+ + +  GG V+VHC +GVSRS++  LA+L+  +
Sbjct: 721 IEYLTLQLDDVPQTQLINFFEKTTKFLSDAIDGGGCVMVHCNMGVSRSSSVTLAYLIKSK 780

Query: 107 GMSLTEALCTVRARRD-IHPNDGF 129
             +L EA   ++ RR  + PN GF
Sbjct: 781 RWTLGEAYSFIKERRSCVRPNRGF 804


>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
          Length = 2072

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 42  RDCPGLRYKGFQLMDLPTTDISKYFHIAANFIDEGVSSGGRVLVHCMIGVSRSATCALAF 101
           +D   +++   ++ D P   I  +F + ++ I+     GG+VLVHC+ GVSRSA+  +A+
Sbjct: 31  QDYKKVKHIRIKVNDNPGNKIGIFFDMVSDKIESVRRVGGKVLVHCIAGVSRSASLVIAY 90

Query: 102 LMIKRGMSLTEALCTVRARRD-IHPNDGF 129
           LM  + ++L +A   V+ +R  I PN GF
Sbjct: 91  LMKYQRLNLRDAHKLVQDKRPLIRPNTGF 119


>SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1029

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 55  MDLPTTDISKYFHIAANFIDEGVSSGGRVLVHCMIGVSRSATCALAFLMIKRGMSLTEAL 114
           +D P  D+  +      FI++G+     VLVHC+ GVSRS    LA++M    +SL +A+
Sbjct: 487 LDEPNADLLSHLDECIRFIEDGIKHEEPVLVHCLAGVSRSIAVILAYIMKSDQVSLDDAV 546

Query: 115 CTVRA--RRDIHPNDGF 129
             +      +I PN GF
Sbjct: 547 NKMSEIYSSEISPNQGF 563


>SB_35774| Best HMM Match : DSPc (HMM E-Value=1e-26)
          Length = 1418

 Score = 50.0 bits (114), Expect = 8e-07
 Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 4/85 (4%)

Query: 47  LRYKGFQLMDLPTTDISKYFHIAANFIDEGV-SSGGRVLVHCMIGVSRSATCALAFLMIK 105
           L+  G + +   T +I  +F  A  F    +   G +VLVHC  G+SRSA+  +A+ M +
Sbjct: 295 LKENGVEYVLNITKEIDNFF--AGTFTYFNIRDKGSKVLVHCKRGISRSASTVIAYGMKE 352

Query: 106 RGMSLTEALCTVRARRD-IHPNDGF 129
            G SL + +  V++RR  ++PN GF
Sbjct: 353 YGTSLNDTMKHVKSRRQCVNPNQGF 377


>SB_12537| Best HMM Match : DSPc (HMM E-Value=1.3e-09)
          Length = 195

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 72  FIDEGVSSGGRVLVHCMIGVSRSATCALAFLMIKRGMSLTEALCTVRARR 121
           FI+E  S G  V VHC  G  RSAT    +LM    ++  EA   ++++R
Sbjct: 120 FIEEIRSKGDSVYVHCKAGRGRSATLVACYLMKNMALNPEEAHLFIKSKR 169


>SB_33732| Best HMM Match : Pkinase (HMM E-Value=9e-10)
          Length = 322

 Score = 35.5 bits (78), Expect = 0.018
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 11/73 (15%)

Query: 14  LRRMGINYVLNTAEGKRYTQVDTDHLYYRDCPGLRYKGFQLMDLPTTDISKYFHIAANFI 73
           L+R  I ++LN A G         +++ +D     YK  +L+DLP TD+         FI
Sbjct: 260 LQRNNITHILNVATG-------VVNVFAKD---FTYKNIELLDLPETDLVAQLPQMFQFI 309

Query: 74  DEGVSSGGRVLVH 86
           ++G+ +G  VLVH
Sbjct: 310 NDGLQAGA-VLVH 321


>SB_10767| Best HMM Match : DSPc (HMM E-Value=2.5e-07)
          Length = 324

 Score = 34.3 bits (75), Expect = 0.041
 Identities = 23/83 (27%), Positives = 35/83 (42%)

Query: 46  GLRYKGFQLMDLPTTDISKYFHIAANFIDEGVSSGGRVLVHCMIGVSRSATCALAFLMIK 105
           G+ Y    + DL T    +        +   +++G RV VHC  GV RS      FLM  
Sbjct: 216 GISYIWLPMEDLSTESRIENLPQGVYLLHGLLNNGHRVYVHCNGGVGRSTAIVCGFLMYV 275

Query: 106 RGMSLTEALCTVRARRDIHPNDG 128
              SL +    + ++R +   DG
Sbjct: 276 LHWSLAKVQYNICSKRPVAFIDG 298


>SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 32.7 bits (71), Expect = 0.12
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 90   GVSRSATCALAFLMIKRGMSLTEALCTVRARRDI-HPNDGF 129
            G+SRS T   A++M    +S  + L  +RA R I +PN GF
Sbjct: 983  GISRSTTICAAYIMTITELSWRQTLQAIRANRSIANPNYGF 1023


>SB_225| Best HMM Match : DSPc (HMM E-Value=8.6e-05)
          Length = 881

 Score = 30.7 bits (66), Expect = 0.50
 Identities = 15/35 (42%), Positives = 18/35 (51%)

Query: 72  FIDEGVSSGGRVLVHCMIGVSRSATCALAFLMIKR 106
           FI++  S G  V VHC  G  RS T    +LM  R
Sbjct: 181 FIEDMRSKGDSVYVHCKAGRGRSTTLVACYLMKAR 215


>SB_33267| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-10)
          Length = 1292

 Score = 30.3 bits (65), Expect = 0.66
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 90  GVSR--SATCALAFLMIKRGMSLTEALCTVRARRDIHPN 126
           GV R  S  CA A L+  R  S+T   CT   +RD +PN
Sbjct: 826 GVQRLYSTWCANALLLTVREGSITHVYCTKNIQRDPNPN 864


>SB_44472| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 206

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 12/89 (13%)

Query: 26  AEGKRYTQVDTDHLYYRDCPGLRYKGFQLMDLPTTDISKYFHIA-ANFIDEGVSSGGR-- 82
           AE   + +V T+ +  RD    + + F+L  +PT      +H+   ++ D   +S  R  
Sbjct: 71  AEDFGHVRVFTEDI--RDSSPYKTRRFRLQHMPTKQQRTVYHVQFTDWPDHRRTSTTRSS 128

Query: 83  -------VLVHCMIGVSRSATCALAFLMI 104
                  VLVHC  GV R+    L  LMI
Sbjct: 129 VHESKPPVLVHCTAGVGRTGVIILTDLMI 157


>SB_40495| Best HMM Match : Y_phosphatase (HMM E-Value=2.8e-06)
          Length = 118

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 77  VSSGGRVLVHCMIGVSRSATCALAFLMIKR 106
           V   G ++VHC  GV RS    +   MIKR
Sbjct: 62  VPGTGPLVVHCSAGVGRSGAFIVIDSMIKR 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.139    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,260,497
Number of Sequences: 59808
Number of extensions: 155116
Number of successful extensions: 298
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 15
length of query: 146
length of database: 16,821,457
effective HSP length: 76
effective length of query: 70
effective length of database: 12,276,049
effective search space: 859323430
effective search space used: 859323430
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 56 (26.6 bits)