GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002678-TA|BGIBMGA002678-PA|IPR006020|Phosphotyrosine
interaction region, IPR000980|SH2 motif
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   6.5  

>SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 214

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 83  RALTARPRMSHSGANVALTVSSKAITLAVLEGGDTIARHDMPRVSFASGG-DADSLDYVA 141
           +ALT   +++H GA   L + S   T+  L      ++   PR    +   D  +  Y  
Sbjct: 117 KALTGYQKLAHGGAIATLLIESLE-TVRNLRSSQANSQSTQPRDPIPTENFDVRTPSYSI 175

Query: 142 YVAKSAPPTEWRACYVLECGGRLAQDVIATIGQAFELR 179
              K  P  +W    V +   RL       + +A +L+
Sbjct: 176 NYKKPVPAGDWVIVRVKDDVARLYNSKSQLLAEALDLQ 213


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,517,427
Number of Sequences: 5004
Number of extensions: 50896
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 112
Number of HSP's gapped (non-prelim): 1
length of query: 418
length of database: 2,362,478
effective HSP length: 75
effective length of query: 343
effective length of database: 1,987,178
effective search space: 681602054
effective search space used: 681602054
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)