GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002678-TA|BGIBMGA002678-PA|IPR006020|Phosphotyrosine
interaction region, IPR000980|SH2 motif
         (418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749...    37   0.026
04_01_0506 - 6624622-6625450,6625497-6626506                           32   0.74 
05_03_0006 + 7315060-7316292                                           29   6.9  
08_02_0683 + 20024940-20025191,20025298-20025675                       29   9.2  
06_01_1061 + 8562039-8562485                                           29   9.2  
01_06_1094 - 34478538-34478624,34478860-34478931,34479154-344792...    29   9.2  

>02_05_1052 +
           33770355-33773981,33774217-33774336,33774880-33774996,
           33775322-33775411,33775971-33776078,33776304-33776351
          Length = 1369

 Score = 37.1 bits (82), Expect = 0.026
 Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 6/170 (3%)

Query: 51  RSQVAKECIARVCAAAGLRSADKKRRVSQAAARALTARPRMSHSGANVALTVSSKAITLA 110
           R+++A +    +  +  L   D K   S A+ R ++ R R++  G +  +T + K     
Sbjct: 527 RTRLASDSAGNILKSMDLADRDNKPSTSSASLRGMSPRRRLASDGISKNITFTEKDDRTM 586

Query: 111 VLEGGDTIARHDMPRVSFASGGDADSLDYVAYVAKSA--PPTEWRACYVLECGGRLAQDV 168
                 ++A  ++  +       ADS+     + +    P T   A   L    RLA D 
Sbjct: 587 P----SSVASQEISTIRRLPSDGADSISKNIDLPEKVTRPATSSAASRGLSPRRRLASDG 642

Query: 169 IATIGQAFELRFKEFLTKPSTLNLNGSLPSCESACGLVEDREYYNDMPDK 218
           +  I ++ +L  K+     ST  L G  P  + A   V+      D  +K
Sbjct: 643 VNAISKSIDLADKDTGPARSTAALRGVSPRRQLASDRVDSISKNTDFTEK 692


>04_01_0506 - 6624622-6625450,6625497-6626506
          Length = 612

 Score = 32.3 bits (70), Expect = 0.74
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 325 GPISRTTAEKLVVEDGEFLVRESTACAGQFVLTGA-RRGLHKHLLLVDP 372
           GP+ RT  E++  +  +F+ R+  A + Q +   A RRGLH HL   DP
Sbjct: 496 GPVRRTRYEQVRDDLNKFMHRKGRARSPQDLFVWALRRGLHDHLNSDDP 544


>05_03_0006 + 7315060-7316292
          Length = 410

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 61  RVCAAAGLRSADKKRRVSQAAARALTARPRMSHSGANVALTVSSKAITLAVLEGGDTIAR 120
           R  AAA L +AD++RR S     + T + + S + A   +  +S A   A   G     R
Sbjct: 227 RATAAAAL-AADERRRRSLDMFASATRQQQSSQNPAFTIVAGTSTAARDAGGAGASATIR 285

Query: 121 HDMPRVSFASGGDADSLDYVAYVAKSAPPTE 151
            D P    A+G DA S D    V  + PP+E
Sbjct: 286 RDDP--GAAAGDDAASSD-GELVECAYPPSE 313


>08_02_0683 + 20024940-20025191,20025298-20025675
          Length = 209

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 97  NVALTVSSKAITLAVLEGGDTIARHDMPRVSFASGGDADSLDYVAYVAKSAPPTEWRACY 156
           N++L+ +   + +++L G   + R D    +   GG+ D  D +   A S+P T  RA +
Sbjct: 54  NLSLSFALAMLFISLL-GRSILRRSDAKAEAELGGGEEDGDDVLPEKASSSPETHPRAHW 112

Query: 157 VLECGGRLAQDVIATIGQAF 176
           +L+       +V   +G AF
Sbjct: 113 MLQGWSPRDVEVGFVMGLAF 132


>06_01_1061 + 8562039-8562485
          Length = 148

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query: 129 ASGGDADSLDYVAYVAKSAPPTEWRACYVLECGGRLAQDVIATIGQAFELR 179
           A GGD  +  +++  A +A  + WR C+ L  G RL +    T G+  + R
Sbjct: 96  AEGGDGAAGPHLSGAAGAAGGSGWRQCHQLLAGTRLRRSSRETEGRPAKRR 146


>01_06_1094 -
           34478538-34478624,34478860-34478931,34479154-34479222,
           34479312-34479422,34480390-34480528,34480590-34480705,
           34480821-34480968,34481058-34481215,34481654-34481827,
           34482592-34483056
          Length = 512

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 11/89 (12%)

Query: 304 ECAPLTAEAQAALLAKEPWFHGPISRTTA----EKLVVE--DGEFLVRESTACAGQFVLT 357
           +C   T   ++ LL    +F G + R        KLV E  D E ++ E    AG     
Sbjct: 292 KCVSETQSRRSTLL----FFRGRLRRNAGGKIRSKLVTELKDAEGIIIEE-GTAGADGKA 346

Query: 358 GARRGLHKHLLLVDPIGVVRTKDRVFDSV 386
            A+ G+ K L  ++P G   +  R+FD++
Sbjct: 347 AAQNGMRKSLFCLNPAGDTPSSARLFDAI 375


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.133    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,750,320
Number of Sequences: 37544
Number of extensions: 395995
Number of successful extensions: 1038
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1036
Number of HSP's gapped (non-prelim): 7
length of query: 418
length of database: 14,793,348
effective HSP length: 84
effective length of query: 334
effective length of database: 11,639,652
effective search space: 3887643768
effective search space used: 3887643768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)