Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002677-TA|BGIBMGA002677-PA|undefined
         (168 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   1.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   3.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   6.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 5   TDISTKLENSRNTLRKIARNDG 26
           T    KL  S +TLRKIA+N G
Sbjct: 889 TQTLDKLIRSPDTLRKIAQNRG 910


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 7/16 (43%), Positives = 13/16 (81%)

Query: 51  TVLVPSRLMNLPQEGD 66
           T+ VP++L+ + Q+GD
Sbjct: 134 TITVPNKLLRISQDGD 149


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 1   MSFNTDISTKLENSRNTLRKIARND-GAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLM 59
           M  N +I+  +++++NT+     ND      K++I N  E+  +M  +    +   ++ M
Sbjct: 411 MEINQNIAQNIDHAKNTIIDYRNNDLSINEEKRTIEN--EQLNRMYKSYPNYIDKETKDM 468

Query: 60  NL 61
           NL
Sbjct: 469 NL 470


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 6/26 (23%), Positives = 17/26 (65%)

Query: 13  NSRNTLRKIARNDGAEFSKQSILNDM 38
           N+R+ + K+ + +G EF   + ++++
Sbjct: 160 NARSVVEKMRKENGKEFDCHNYMSEL 185


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.127    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,696
Number of Sequences: 429
Number of extensions: 813
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 168
length of database: 140,377
effective HSP length: 53
effective length of query: 115
effective length of database: 117,640
effective search space: 13528600
effective search space used: 13528600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)