GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002677-TA|BGIBMGA002677-PA|undefined
         (168 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    24   0.76 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   3.1  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   4.1  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   4.1  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   4.1  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 23.8 bits (49), Expect = 0.76
 Identities = 14/38 (36%), Positives = 17/38 (44%)

Query: 3   FNTDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEK 40
           FN  +   L  S+  + K   N G E SKQ I N   K
Sbjct: 73  FNVSLRIILVFSKGKVIKSFFNQGYELSKQEIFNCCSK 110


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 24  NDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQ 63
           NDG       ++N   +F   V   + TV VP+    + Q
Sbjct: 237 NDGDNKPDTILVNGFGRFKHFVGADNSTVFVPTARFTVEQ 276


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
          oxygenase protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 19 RKIARNDGAEFSKQSILNDMEK 40
          +++A  + AE  K+  LND+EK
Sbjct: 59 KELAEKEEAETLKRYKLNDLEK 80


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 19  RKIARNDGAEFSKQSILNDMEK 40
           +++A  + AE  K+  LND+EK
Sbjct: 219 KELAEKEEAETLKRYKLNDLEK 240


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 19  RKIARNDGAEFSKQSILNDMEK 40
           +++A  + AE  K+  LND+EK
Sbjct: 219 KELAEKEEAETLKRYKLNDLEK 240


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.127    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,359
Number of Sequences: 317
Number of extensions: 767
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 168
length of database: 114,650
effective HSP length: 52
effective length of query: 116
effective length of database: 98,166
effective search space: 11387256
effective search space used: 11387256
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)
S2: 40 (20.2 bits)