GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002677-TA|BGIBMGA002677-PA|undefined
         (168 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    27   1.9  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   2.5  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    25   5.9  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   5.9  

>SPAC3A11.05c |kms1||meiotic spindle pole body protein
          Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 4  NTDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEK 40
          N D+S   +N R+  +K+  N+   F+ Q+    ME+
Sbjct: 61 NADLSITKDNFRDVYKKLTENEDDSFANQAEKPSMEQ 97


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)

Query: 7   ISTKLENSRNTLRKIARNDGAEFSKQSILNDMEK 40
           IST  +  R T     RNDG + +     ND EK
Sbjct: 246 ISTHTKKRRRTANTSQRNDGLDLNTVFTTNDWEK 279


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 5  TDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLV 54
          TD+   LEN +  L +I       + K  +   + KF+  +N   E  L+
Sbjct: 4  TDVFYNLENEKQFLAEIDELLTIPYEKNELEIGVSKFLSFINKYGEPYLI 53


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 11  LENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLV 54
           L NS  TL  + R    +    SI   +    K++ T+DE VLV
Sbjct: 223 LRNSTWTLSNMCRGKNPQPDWNSISQVIPVLSKLIYTLDEDVLV 266


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.127    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 524,942
Number of Sequences: 5004
Number of extensions: 17362
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 4
length of query: 168
length of database: 2,362,478
effective HSP length: 68
effective length of query: 100
effective length of database: 2,022,206
effective search space: 202220600
effective search space used: 202220600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)