GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002677-TA|BGIBMGA002677-PA|undefined
         (168 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1511 + 27276736-27276998,27277090-27277267,27277740-272784...    27   5.9  
07_03_0135 + 14070212-14070311,14072207-14072968,14082526-140826...    27   5.9  
11_05_0008 - 18335815-18336080,18340549-18340923,18342570-18342669     27   7.8  
04_03_0048 + 10157468-10158017,10158426-10158655                       27   7.8  

>07_03_1511 +
           27276736-27276998,27277090-27277267,27277740-27278436,
           27278674-27278756,27278790-27279293,27279504-27279920
          Length = 713

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 13  NSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQEGDD-DPF 70
           N   T+R  A    AEF+K   +  + + +++V+T+ +T   P R   L    DD DPF
Sbjct: 310 NQHTTIRLYAAKVMAEFAKSLRIVTVPEAMQLVSTLLDTEGRPKRGHPLLNADDDQDPF 368


>07_03_0135 +
           14070212-14070311,14072207-14072968,14082526-14082696,
           14082718-14082950,14082966-14083310,14084955-14084966
          Length = 540

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 7   ISTKLENSRNTLRK-IARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLP-QE 64
           + T  +N++  + + +A++    F+K   LN ME+  K ++T+ + V V     N     
Sbjct: 53  LRTLQQNTQKDITEAVAKSVQDAFTKIGFLNHMERLDKRISTLTDRVAVLETPSNEEVVS 112

Query: 65  GDDD 68
           GDDD
Sbjct: 113 GDDD 116


>11_05_0008 - 18335815-18336080,18340549-18340923,18342570-18342669
          Length = 246

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 7   ISTKLENSRNTLRK-IARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLP-QE 64
           + T  EN++  + + +A++    F+K   LN ME+  K ++T+ + V       N     
Sbjct: 53  LRTLQENTQKDITEAVAKSVQDAFTKIGFLNHMERLDKRISTLTDRVAALETPSNEEVVS 112

Query: 65  GDDD 68
           GDDD
Sbjct: 113 GDDD 116


>04_03_0048 + 10157468-10158017,10158426-10158655
          Length = 259

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 7  ISTKLENSRNTLRK-IARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLP-QE 64
          + T  EN++  + + +A++    F+K   LN ME+  K ++T+ + V       N     
Sbjct: 22 LRTLQENTQKDITEAVAKSVQDAFTKIGFLNHMERLDKRISTLTDRVAALETPSNEEVVS 81

Query: 65 GDDD 68
          GDDD
Sbjct: 82 GDDD 85


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.127    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,418,771
Number of Sequences: 37544
Number of extensions: 108476
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 4
length of query: 168
length of database: 14,793,348
effective HSP length: 77
effective length of query: 91
effective length of database: 11,902,460
effective search space: 1083123860
effective search space used: 1083123860
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)