GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002677-TA|BGIBMGA002677-PA|undefined
         (168 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52640| Best HMM Match : Spot_14 (HMM E-Value=0.25)                  36   0.013
SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.86 
SB_38234| Best HMM Match : RuvB_C (HMM E-Value=7)                      30   1.1  
SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)              29   2.0  
SB_37892| Best HMM Match : rve (HMM E-Value=2.1e-16)                   28   4.6  
SB_46896| Best HMM Match : PIG-L (HMM E-Value=1.5)                     27   6.0  
SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_52640| Best HMM Match : Spot_14 (HMM E-Value=0.25)
          Length = 245

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 15/34 (44%), Positives = 25/34 (73%)

Query: 29 FSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLP 62
          + K+S++  +E F+K V+ M  TVL+P RLM++P
Sbjct: 9  YYKRSVVAVVENFLKTVDDMKATVLIPCRLMDIP 42


>SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 35  LNDMEKFVKMVNTMDETVLVPSRLMNLPQEGDDD-PFSMFSMLNDLKTELLWSGGDSQEQ 93
           LND  +     N MDET+  P +    P E +++ PF     + D +TE     G++ E+
Sbjct: 236 LNDGLEKSDSENEMDETI-EPEKEEGRPDEPEEEEPFEETLYVPDKETEYFGEAGEATEE 294

Query: 94  VE 95
           +E
Sbjct: 295 IE 296


>SB_38234| Best HMM Match : RuvB_C (HMM E-Value=7)
          Length = 184

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 6/47 (12%)

Query: 26 GAEFSKQSILNDMEKFVKMVNTMD------ETVLVPSRLMNLPQEGD 66
          G +F  +S    ++KF+K+++T+D         +VP+ LMN P  G+
Sbjct: 51 GTQFKYESNSAGLDKFIKLIDTVDLEGGPVGKPVVPAALMNRPTRGE 97


>SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)
          Length = 1171

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 64  EGDDDPFSMFSMLNDLKTELLWSGGDSQEQVERGRRV 100
           EGD D FS F+ L      +L  GGD+  ++  GR V
Sbjct: 151 EGDGDEFSFFNSLWFCLASMLQQGGDATPKMLSGRIV 187


>SB_37892| Best HMM Match : rve (HMM E-Value=2.1e-16)
          Length = 824

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 29  FSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQEGDDDPFSMFSMLNDLKTELLWSGG 88
           F     +ND+++F+ MVN M +   +PS L NL     ++P         LK E  W+ G
Sbjct: 328 FPTPQTVNDLQRFMGMVNLMGK--FLPS-LANL-----NEPLRQL-----LKKENQWAWG 374

Query: 89  DSQEQ 93
           +SQ+Q
Sbjct: 375 ESQQQ 379


>SB_46896| Best HMM Match : PIG-L (HMM E-Value=1.5)
          Length = 312

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 13/65 (20%)

Query: 29  FSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQEGDDDPFSMFSMLNDLKTELLWSGG 88
           F     +ND+++F+ MVN M +   +PS L NL     ++P         LK E  W+ G
Sbjct: 61  FPTPQTVNDLQRFMGMVNQMGK--FLPS-LANL-----NEPLRQL-----LKKENEWAWG 107

Query: 89  DSQEQ 93
           +SQ+Q
Sbjct: 108 ESQQQ 112


>SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 4   NTDISTKLENSRNTLRKIARNDGAEFSKQSILNDME-KFVKMVNT-------MDETVLVP 55
           N +I   L  ++ TL  +++       K   L D++ K +K  +T       + E +L  
Sbjct: 164 NKEIERILSENKVTLADLSKTQENLMKKAKELEDLQQKLLKQEDTAKQDKRRLQEVILTK 223

Query: 56  SRLMNLPQEGDDDPFSMFSMLNDLKTELLWSGGDSQEQVE 95
            + +    E   +  +  ++L+D KTE +     SQEQ++
Sbjct: 224 EKELFKLSEEYKELQAKITVLSDSKTESMAMASSSQEQIK 263


>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 4    NTDISTKLENSRNTLRKIARNDGAEFS-KQSILNDMEKFVKMVNTMDE 50
            N DI T+LE++   LRK      + ++  +S  +++E+F  M N   +
Sbjct: 1347 NDDIKTRLEHTEKELRKTEGERSSVYALNESSRSELEEFKNMNNNFKD 1394


>SB_56072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 6/44 (13%)

Query: 29 FSKQSILNDMEKFVKMVNTMD------ETVLVPSRLMNLPQEGD 66
          F+K+  +N +E  +K+++T+D         +VP+ LMN P  G+
Sbjct: 10 FAKKGKVNVLEDTIKLIDTVDLEGGPVGKPVVPAALMNRPTRGE 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.127    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,774,743
Number of Sequences: 59808
Number of extensions: 123032
Number of successful extensions: 219
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 10
length of query: 168
length of database: 16,821,457
effective HSP length: 77
effective length of query: 91
effective length of database: 12,216,241
effective search space: 1111677931
effective search space used: 1111677931
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)