GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002677-TA|BGIBMGA002677-PA|undefined
         (168 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001691-1|AAN71446.1|  279|Drosophila melanogaster RE58929p pro...    79   4e-15
AE013599-3997|AAF47303.1|  279|Drosophila melanogaster CG2765-PA...    79   4e-15
AY051917-1|AAK93341.1|  653|Drosophila melanogaster LD40453p pro...    27   9.9  
AE014298-621|AAF45939.2|  653|Drosophila melanogaster CG2982-PB,...    27   9.9  
AE014298-620|AAN09120.1|  653|Drosophila melanogaster CG2982-PA,...    27   9.9  
AE014296-2198|AAF49875.3| 1988|Drosophila melanogaster CG11008-P...    27   9.9  

>BT001691-1|AAN71446.1|  279|Drosophila melanogaster RE58929p
          protein.
          Length = 279

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 2/66 (3%)

Query: 1  MSFNTDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMN 60
          MS  TD+ TKLE SRN LR+IAR+D  +FSK SI+N MEKFVK VN MD+T+LVP RLM+
Sbjct: 1  MSGYTDL-TKLETSRNCLRRIARHDEQQFSKDSIVNVMEKFVKTVNIMDDTILVPCRLMD 59

Query: 61 LPQEGD 66
            Q GD
Sbjct: 60 -RQIGD 64



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 70  FSMFSMLNDLKTELLWSGGDSQEQVERGRR 99
           F++++MLN LK +LLW+     +  +   +
Sbjct: 109 FNLYNMLNSLKKDLLWTANQEDDDQQHSEQ 138


>AE013599-3997|AAF47303.1|  279|Drosophila melanogaster CG2765-PA
          protein.
          Length = 279

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 2/66 (3%)

Query: 1  MSFNTDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMN 60
          MS  TD+ TKLE SRN LR+IAR+D  +FSK SI+N MEKFVK VN MD+T+LVP RLM+
Sbjct: 1  MSGYTDL-TKLETSRNCLRRIARHDEQQFSKDSIVNVMEKFVKTVNIMDDTILVPCRLMD 59

Query: 61 LPQEGD 66
            Q GD
Sbjct: 60 -RQIGD 64



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 70  FSMFSMLNDLKTELLWSGGDSQEQVERGRR 99
           F++++MLN LK +LLW+     +  +   +
Sbjct: 109 FNLYNMLNSLKKDLLWTANQEDDDQQHSEQ 138


>AY051917-1|AAK93341.1|  653|Drosophila melanogaster LD40453p
           protein.
          Length = 653

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 5   TDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQE 64
           T  S   + +R T RK AR+ G E +    +N       +V       L P    + PQ 
Sbjct: 112 TKESEATQGARATKRKQARSLGLERTSPIQVNGAALACPLVRKS----LPPGEANSCPQP 167

Query: 65  GDDDPFSMFSMLNDLKTELLWSGGDSQEQVE 95
              DP ++ S++  +K E    G ++ ++ E
Sbjct: 168 PKKDPAAVNSLVKIIKAEPTEEGNNNNDEKE 198


>AE014298-621|AAF45939.2|  653|Drosophila melanogaster CG2982-PB,
           isoform B protein.
          Length = 653

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 5   TDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQE 64
           T  S   + +R T RK AR+ G E +    +N       +V       L P    + PQ 
Sbjct: 112 TKESEATQGARATKRKQARSLGLERTSPIQVNGAALACPLVRKS----LPPGEANSCPQP 167

Query: 65  GDDDPFSMFSMLNDLKTELLWSGGDSQEQVE 95
              DP ++ S++  +K E    G ++ ++ E
Sbjct: 168 PKKDPAAVNSLVKIIKAEPTEEGNNNNDEKE 198


>AE014298-620|AAN09120.1|  653|Drosophila melanogaster CG2982-PA,
           isoform A protein.
          Length = 653

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 5   TDISTKLENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQE 64
           T  S   + +R T RK AR+ G E +    +N       +V       L P    + PQ 
Sbjct: 112 TKESEATQGARATKRKQARSLGLERTSPIQVNGAALACPLVRKS----LPPGEANSCPQP 167

Query: 65  GDDDPFSMFSMLNDLKTELLWSGGDSQEQVE 95
              DP ++ S++  +K E    G ++ ++ E
Sbjct: 168 PKKDPAAVNSLVKIIKAEPTEEGNNNNDEKE 198


>AE014296-2198|AAF49875.3| 1988|Drosophila melanogaster CG11008-PA
            protein.
          Length = 1988

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/55 (21%), Positives = 25/55 (45%)

Query: 6    DISTKLENSRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMN 60
            D+S K + +R +LR    N+      + ++N +       + M++ V  P+   N
Sbjct: 1548 DVSVKSKGTRKSLRASLNNEVPAIQPEPVINTVSSSENSTSKMEDVVTEPNDTKN 1602


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.312    0.127    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,611,430
Number of Sequences: 52641
Number of extensions: 180553
Number of successful extensions: 343
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 8
length of query: 168
length of database: 24,830,863
effective HSP length: 80
effective length of query: 88
effective length of database: 20,619,583
effective search space: 1814523304
effective search space used: 1814523304
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)