GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002677-TA|BGIBMGA002677-PA|undefined
         (168 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical...    34   0.060
AC006627-5|AAO38662.1|  529|Caenorhabditis elegans Hypothetical ...    28   3.0  
AC006627-4|AAK85459.1|  712|Caenorhabditis elegans Hypothetical ...    28   3.0  
Z78200-4|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue...    27   6.9  

>AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical
           protein C15F1.1 protein.
          Length = 360

 Score = 33.9 bits (74), Expect = 0.060
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 3   FNTDISTKLENSRNTLRKIARNDGAEFS-KQSILNDMEKFVKMVNTMDETVLVPSRLMNL 61
           FN     K E  R         D   FS ++S+++D+E F + VNT D   +V +    +
Sbjct: 59  FNLKWKKKKETQRKQCSISTGKDRFRFSARRSLIDDVETFQRNVNTSDVISIVHTFQFII 118

Query: 62  PQEGDDDPFSMFSMLND-LKTELLWSGGDS 90
                 DP+S+++  N+ L T + +S  D+
Sbjct: 119 IFNRFPDPYSVYTKHNNTLFTYIFFSAADT 148


>AC006627-5|AAO38662.1|  529|Caenorhabditis elegans Hypothetical
           protein E01A2.2b protein.
          Length = 529

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 14  SRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQEGDDD 68
           +R+  R++  N+G    KQ  +ND++  VK+    D+ +     L N   E D D
Sbjct: 159 NRDITRRVRTNNGIASHKQVAINDLKLAVKLTVLYDKKI----GLFNAADEADAD 209


>AC006627-4|AAK85459.1|  712|Caenorhabditis elegans Hypothetical
           protein E01A2.2a protein.
          Length = 712

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 14  SRNTLRKIARNDGAEFSKQSILNDMEKFVKMVNTMDETVLVPSRLMNLPQEGDDD 68
           +R+  R++  N+G    KQ  +ND++  VK+    D+ +     L N   E D D
Sbjct: 342 NRDITRRVRTNNGIASHKQVAINDLKLAVKLTVLYDKKI----GLFNAADEADAD 392


>Z78200-4|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
           protein T04H1.4 protein.
          Length = 1298

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 6   DISTKLENSRNTLRKIARNDGAEFSKQSILND 37
           ++S KLEN R  L+K AR D A  S +S L D
Sbjct: 624 EVSEKLENLRKRLKK-ARKDLAPLSAKSNLYD 654


>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
           ceRAD50 protein.
          Length = 1298

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 6   DISTKLENSRNTLRKIARNDGAEFSKQSILND 37
           ++S KLEN R  L+K AR D A  S +S L D
Sbjct: 624 EVSEKLENLRKRLKK-ARKDLAPLSAKSNLYD 654


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.127    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,758
Number of Sequences: 27539
Number of extensions: 94666
Number of successful extensions: 246
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 5
length of query: 168
length of database: 12,573,161
effective HSP length: 76
effective length of query: 92
effective length of database: 10,480,197
effective search space: 964178124
effective search space used: 964178124
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)