Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002674-TA|BGIBMGA002674-PA|IPR001670|Iron-containing
alcohol dehydrogenase
(271 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc... 101 1e-22
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 30 0.31
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 28 1.2
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha... 27 2.9
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.9
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 26 5.0
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 8.7
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp... 25 8.7
>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 101 bits (242), Expect = 1e-22
Identities = 73/260 (28%), Positives = 112/260 (43%), Gaps = 25/260 (9%)
Query: 1 MTDPNVASLSPMKAVLDSLTRNGINYKVYDKVRVEPTDGSFKDAIHFAKEGNFDSFVAIG 60
+TDP + + V L I +YD V+ PT G+ + K+ N DS V+IG
Sbjct: 80 VTDPGIIKVGLYDKVKALLEEQSITVHLYDGVQPNPTVGNVNQGLEIVKKENCDSMVSIG 139
Query: 61 GGSVMDTCKAANLYYSDPDAEFLDYVNAPVGKGKAVNIQVKPMIAIPXXXXXXXXXXXXX 120
GGS D K L ++ + DY G K+ Q+ P+IAI
Sbjct: 140 GGSAHDCAKGIALLATN-GGKIADY----EGVDKSSKPQL-PLIAINTTAGTASEMTRFA 193
Query: 121 IFDYEEIHAKTGISHNALRPILALIDPLHTLTVPEKVSNYSGFDIFCHALESFTAIPFTE 180
I E H K I PIL++ DP +P ++ +G D HA+E++ +
Sbjct: 194 IITEETRHIKMAIIDKHTMPILSVNDPETMYGLPPSLTAATGMDALTHAVEAYVS----- 248
Query: 181 RGPAPANPALRPAYQGSNPISDVWARFCLQTLQKYFVRSVNNSGDVEARSSMHLAATMAG 240
+NPI+D A C++ + KY R+V+N D EAR +M A + G
Sbjct: 249 --------------TAANPITDACAVKCIELVNKYLKRAVDNGKDEEARDNMAYAEFLGG 294
Query: 241 VGIGNAGVHLCHGLAYPIAG 260
+ NA + H +A+ + G
Sbjct: 295 MAFNNASLGYVHAMAHQLGG 314
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 30.3 bits (65), Expect = 0.31
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 2 TDPNVASLSPMKAVLDSLTRNGINYKVYDKVRVEPTDGSFK 42
TDP+ +L P++ ++ +++ +N ++Y +V+ E FK
Sbjct: 1468 TDPSTNTLFPLRVIISNVSGFVVNVEIYAEVKTENNSWIFK 1508
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 127 IHAKTGISHNALRPILALIDPLHTLTVPEKVSNYSGFDIFCHALESFTAIPFTERGPAPA 186
IH++ GI+H ++P LI L +++++ D+ C+ + TA+ G +
Sbjct: 575 IHSQ-GIAHRDIKPENILISEYGVL----RITDFGACDVLCNPGDDITAVESKSMGIFGS 629
Query: 187 NPALRP 192
+P + P
Sbjct: 630 DPYMAP 635
>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
Caf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 2.9
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 16 LDSLTRNGINYKVYDKVRVEPTD 38
++ LT++GI++K + +V +EP D
Sbjct: 123 IELLTKSGIDFKKHQEVGIEPAD 145
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 169 ALESFTAIPFTERGPAPANPALRPAYQGSNPI--SDVWARFCL 209
A+E +T+IP P P R +Q +P+ +V+ +FCL
Sbjct: 835 AIEKYTSIPSLRDLHKPTRPLKRVHWQRVDPLPGPNVFTKFCL 877
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 5.0
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 12 MKAVLDSLTRNGINYKVYDKVRVEPTDGSF---KDAIHFAKEGNFDSFVAIGGGSVMDTC 68
+ ++ S +G + K+ GS K +H A E + +GG S + C
Sbjct: 222 LNVIIGSGKESGAALSCHPKIAYLAFTGSLATGKKIMHAAAENIVPLTLELGGKSPLIIC 281
Query: 69 KAANLYYSDPDAEFLDYVN 87
+ A+L + P A F + N
Sbjct: 282 EDADLSLAIPSAAFAIFFN 300
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 29 YDKVRVEPTDGSFKDAIHFAKEGNFDSFVAIGGGSVMDTCKAANLYYSDPDAEFLDYVN 87
+DK +EP + +F D K GN +S+ S + Y+D D D N
Sbjct: 162 FDKSVMEPKNITFNDKSGLTKFGNSNSYETTYSDSSNYHTSTDSSQYNDQDDHVYDDTN 220
>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 133 ISHNALRPILALIDPLHTLTVPEKVSNYS 161
I ++P+L L+ +H +T+P V NYS
Sbjct: 265 IPEQGVKPLLDLLH-VHDITIPWPVQNYS 292
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,223,294
Number of Sequences: 5004
Number of extensions: 48738
Number of successful extensions: 103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 9
length of query: 271
length of database: 2,362,478
effective HSP length: 72
effective length of query: 199
effective length of database: 2,002,190
effective search space: 398435810
effective search space used: 398435810
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
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