GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002674-TA|BGIBMGA002674-PA|IPR001670|Iron-containing
alcohol dehydrogenase
         (271 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0480 + 9759271-9759735                                           30   2.3  
03_05_0663 + 26546810-26547304                                         29   3.0  
07_01_0338 + 2421953-2422048,2422481-2422548,2422662-2422694,242...    29   4.0  
03_02_0147 - 5923117-5923215,5923882-5924069,5924885-5924977,592...    29   5.3  
07_03_0109 + 13502604-13503059,13503729-13504682                       28   7.0  
04_01_0267 + 3584117-3584922,3585331-3585361                           28   7.0  
07_01_0055 + 424097-427129                                             28   9.2  
01_01_0968 - 7618357-7618529,7618891-7619094,7620896-7621139,762...    28   9.2  

>09_02_0480 + 9759271-9759735
          Length = 154

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 13  KAVLDSLTRNGINYKVYDKVR--VEPTDGSFKDAIHFAKEGNFDSFVAIGGGSVMD 66
           K   D ++ + +++ +  ++   ++ +  +FKD +    +G FD F+ I  GS+MD
Sbjct: 63  KLAPDVISNDEVSHSIQQQIASTIDSSVVAFKDQLDAIFKGKFDEFLRIKFGSIMD 118


>03_05_0663 + 26546810-26547304
          Length = 164

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 169 ALESFTAIPFTERGPAPANPALRPAYQGSNP 199
           A +  +A P  ++ PA   P+++P Y G+NP
Sbjct: 26  ARDLMSAAPSAKKQPAGRKPSVQPGYPGTNP 56


>07_01_0338 +
           2421953-2422048,2422481-2422548,2422662-2422694,
           2425003-2425094,2425167-2425288,2425379-2425380,
           2425565-2425633,2425980-2426078,2426166-2426175
          Length = 196

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/52 (26%), Positives = 24/52 (46%)

Query: 142 LALIDPLHTLTVPEKVSNYSGFDIFCHALESFTAIPFTERGPAPANPALRPA 193
           + + D L+   +P K      + I    + +F +I FT R P P++    PA
Sbjct: 71  ITMTDRLNEFYIPPKTQIDLSYIIIYRKISAFDSISFTARPPLPSDIVWNPA 122


>03_02_0147 -
           5923117-5923215,5923882-5924069,5924885-5924977,
           5925499-5925628,5925720-5925802,5925893-5925976,
           5926253-5926316,5926375-5926515,5926801-5926863,
           5926968-5927006,5927126-5927185,5927567-5927624,
           5927708-5928099
          Length = 497

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 221 NNSGDVEARS-SMHLAATMAGVGIGNAGVHLCHGLA 255
           NN+ D+ A+  S    ATM G+G+G    H+  G A
Sbjct: 320 NNAADISAKEGSQETLATMLGMGLGMLLAHVTRGHA 355


>07_03_0109 + 13502604-13503059,13503729-13504682
          Length = 469

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 8/96 (8%)

Query: 172 SFTAIPFTERGPAPANPALRPAYQGSNPISDVWARFCLQTLQKYFVRSVNNSGDVEARSS 231
           +FTA   +     PA P  R     S+ + D W     +T+  +F  S   +G +    +
Sbjct: 4   TFTARRSSPELVTPARPTPRETKLLSD-LDDQWTLRYYETVVGFFRVSPKMAGGLPGGDN 62

Query: 232 MHLAATMAGVGIGNAGVHLCHGLAYPIAGNVKSFVP 267
             +AA +    +  A VH      YP+AG +++ VP
Sbjct: 63  --IAAKVIKAAVAEALVHY-----YPVAGRLRALVP 91


>04_01_0267 + 3584117-3584922,3585331-3585361
          Length = 278

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 27  KVYDKVRVEPTDGSFKDAIHFAKEGNFDSFVAIGGGSVMDTCKAA 71
           K +  +  +P   SF +  HF +E N + F+     ++   CK A
Sbjct: 175 KCHSHIEYKPHQMSFSNEGHFRREANEEEFLICNAHALFHICKYA 219


>07_01_0055 + 424097-427129
          Length = 1010

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 121 IFDYEEIHAKTGISHNALRPILALIDPLHTLTVPEKVSNYSGFD 164
           I D EEI+     S++  +P+L   D    LTV + + + + FD
Sbjct: 694 IIDDEEINGSCHDSYDYWKPVLFFQDSAKELTVSDLIKSTNNFD 737


>01_01_0968 -
           7618357-7618529,7618891-7619094,7620896-7621139,
           7623008-7623151,7623272-7623487
          Length = 326

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 8/56 (14%)

Query: 224 GDVEARSSMHLAATMAGV---GIGNAGVHLCHGL-----AYPIAGNVKSFVPEDYG 271
           GD+  R S+  A   A V    +G+ G     G      A   AGNVK FVP +YG
Sbjct: 73  GDMNDRESLVAAIRQADVVISAVGHRGTVELDGQLKVVEAIKEAGNVKRFVPSEYG 128


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,880,630
Number of Sequences: 37544
Number of extensions: 323047
Number of successful extensions: 703
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 697
Number of HSP's gapped (non-prelim): 9
length of query: 271
length of database: 14,793,348
effective HSP length: 81
effective length of query: 190
effective length of database: 11,752,284
effective search space: 2232933960
effective search space used: 2232933960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)