GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002674-TA|BGIBMGA002674-PA|IPR001670|Iron-containing
alcohol dehydrogenase
         (271 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032639-7|CAA21631.2|  465|Caenorhabditis elegans Hypothetical ...   288   2e-78
U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer ...    30   1.5  
U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer ...    30   1.5  
U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer ...    30   1.5  
AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.      30   1.5  
U58732-7|AAB00597.1|  345|Caenorhabditis elegans Taf (tbp-associ...    29   4.7  
Z69360-6|CAE45744.1|  454|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z69360-5|CAC42291.2|  732|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z69360-3|CAA93285.2|  780|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>AL032639-7|CAA21631.2|  465|Caenorhabditis elegans Hypothetical
           protein Y38F1A.6 protein.
          Length = 465

 Score =  288 bits (707), Expect = 2e-78
 Identities = 134/270 (49%), Positives = 177/270 (65%)

Query: 1   MTDPNVASLSPMKAVLDSLTRNGINYKVYDKVRVEPTDGSFKDAIHFAKEGNFDSFVAIG 60
           +TD NV +    K    +L    I Y+V+D V +EPT  S + AI FAK   FDSF+A+G
Sbjct: 76  ITDKNVQNTIAFKNAEQALKMVNIEYEVFDDVLIEPTVNSMQKAIAFAKSKQFDSFIAVG 135

Query: 61  GGSVMDTCKAANLYYSDPDAEFLDYVNAPVGKGKAVNIQVKPMIAIPXXXXXXXXXXXXX 120
           GGSV+DT KAA LY S+P+A+FLD+V  P GK       + P+IA+P             
Sbjct: 136 GGSVIDTTKAAALYASNPEADFLDFVGPPFGKSMQPKNPMLPLIAVPTTAGTGSETTAAA 195

Query: 121 IFDYEEIHAKTGISHNALRPILALIDPLHTLTVPEKVSNYSGFDIFCHALESFTAIPFTE 180
           I D  E   KTGI    ++P LA++DPL+ +++P  V+ YSGFD+ CHALESFTA+PF +
Sbjct: 196 IMDLPEHKCKTGIRLRCIKPYLAVVDPLNVMSMPRNVAIYSGFDVLCHALESFTALPFDQ 255

Query: 181 RGPAPANPALRPAYQGSNPISDVWARFCLQTLQKYFVRSVNNSGDVEARSSMHLAATMAG 240
           R P P NP +RP YQGSNPISDVW++  L+ + KYF RS+ +  D EAR+ M  A++ AG
Sbjct: 256 RSPRPENPGVRPLYQGSNPISDVWSKEALRIIGKYFRRSIFDPTDEEARTEMLKASSFAG 315

Query: 241 VGIGNAGVHLCHGLAYPIAGNVKSFVPEDY 270
           +G GNAGVHLCHGL+YPI+   KS V +DY
Sbjct: 316 IGFGNAGVHLCHGLSYPISSQAKSCVADDY 345


>U50197-7|AAM54189.1|  796|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform c protein.
          Length = 796

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 181 RGPAPANPAL-RPAYQGSNPISDVWARFCLQTLQKYFVRSVNNSGDVEARSS 231
           +G  P +P + RP  Q S    DV+ R+C QT    F    +       RSS
Sbjct: 442 QGQVPNDPPISRPVLQPSTVTLDVFRRYCRQTFGNRFFEGESEQSGAIIRSS 493


>U50197-6|AAK68348.1|  892|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform a protein.
          Length = 892

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 181 RGPAPANPAL-RPAYQGSNPISDVWARFCLQTLQKYFVRSVNNSGDVEARSS 231
           +G  P +P + RP  Q S    DV+ R+C QT    F    +       RSS
Sbjct: 538 QGQVPNDPPISRPVLQPSTVTLDVFRRYCRQTFGNRFFEGESEQSGAIIRSS 589


>U50197-5|AAM54188.1|  864|Caenorhabditis elegans Abnormal dauer
           formation protein3, isoform b protein.
          Length = 864

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 181 RGPAPANPAL-RPAYQGSNPISDVWARFCLQTLQKYFVRSVNNSGDVEARSS 231
           +G  P +P + RP  Q S    DV+ R+C QT    F    +       RSS
Sbjct: 510 QGQVPNDPPISRPVLQPSTVTLDVFRRYCRQTFGNRFFEGESEQSGAIIRSS 561


>AF005205-1|AAB61748.1|  796|Caenorhabditis elegans DAF-3 protein.
          Length = 796

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 181 RGPAPANPAL-RPAYQGSNPISDVWARFCLQTLQKYFVRSVNNSGDVEARSS 231
           +G  P +P + RP  Q S    DV+ R+C QT    F    +       RSS
Sbjct: 442 QGQVPNDPPISRPVLQPSTVTLDVFRRYCRQTFGNRFFEGESEQSGAIIRSS 493


>U58732-7|AAB00597.1|  345|Caenorhabditis elegans Taf
           (tbp-associated transcriptionfactor) family protein 11.1
           protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 1/90 (1%)

Query: 180 ERGPAPANPA-LRPAYQGSNPISDVWARFCLQTLQKYFVRSVNNSGDVEARSSMHLAATM 238
           E  P P+ PA  RPA +  +   +  +R   Q L   F +      +   RSS   +   
Sbjct: 206 EEAPGPSRPAPARPARKLDDEEENELSRLKTQVLLSNFSQEQLERYESYRRSSFQKSTIR 265

Query: 239 AGVGIGNAGVHLCHGLAYPIAGNVKSFVPE 268
             +     GV++   +   IAG  K FV E
Sbjct: 266 RLISQYTGGVNVGQSVVIAIAGLAKVFVGE 295


>Z69360-6|CAE45744.1|  454|Caenorhabditis elegans Hypothetical
           protein F25H8.5d protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 42  KDAIHFAKEGN--FDSFVAIGGGSVMDTCKAANLYYSD 77
           KDA+H A EG       VA G G V D  KAA  Y  D
Sbjct: 145 KDAVHGAHEGMRMVGENVAHGAGKVADGAKAAGNYAVD 182


>Z69360-5|CAC42291.2|  732|Caenorhabditis elegans Hypothetical
           protein F25H8.5c protein.
          Length = 732

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 42  KDAIHFAKEGN--FDSFVAIGGGSVMDTCKAANLYYSD 77
           KDA+H A EG       VA G G V D  KAA  Y  D
Sbjct: 471 KDAVHGAHEGMRMVGENVAHGAGKVADGAKAAGNYAVD 508


>Z69360-3|CAA93285.2|  780|Caenorhabditis elegans Hypothetical
           protein F25H8.5a protein.
          Length = 780

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 42  KDAIHFAKEGN--FDSFVAIGGGSVMDTCKAANLYYSD 77
           KDA+H A EG       VA G G V D  KAA  Y  D
Sbjct: 471 KDAVHGAHEGMRMVGENVAHGAGKVADGAKAAGNYAVD 508


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,470,205
Number of Sequences: 27539
Number of extensions: 258597
Number of successful extensions: 495
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 15
length of query: 271
length of database: 12,573,161
effective HSP length: 80
effective length of query: 191
effective length of database: 10,370,041
effective search space: 1980677831
effective search space used: 1980677831
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)