GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002673-TA|BGIBMGA002673-PA|IPR002110|Ankyrin,
IPR001452|Src homology-3
         (372 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   4.7  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    22   8.2  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 224 SLHNGAFHRDEPTPPPRKECSSQDSSLELCDITDSCLD 261
           ++H+GA     P     K+CSS   S +L   T S ++
Sbjct: 28  NIHHGATPPQSPNQQYTKDCSSPTPSDKLNTSTTSSVN 65


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/36 (25%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 296 VHSRSPSASITMMGGVRRCRALYDCS--ADNEDELS 329
           ++++  + S  + GG+  C+  YD +  A+N D ++
Sbjct: 169 LNAKGKTLSAAVSGGIASCKLSYDIAKVAENLDMIN 204


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.131    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,610
Number of Sequences: 317
Number of extensions: 1919
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 372
length of database: 114,650
effective HSP length: 58
effective length of query: 314
effective length of database: 96,264
effective search space: 30226896
effective search space used: 30226896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)