GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002673-TA|BGIBMGA002673-PA|IPR002110|Ankyrin,
IPR001452|Src homology-3
         (372 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.34 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   5.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.6 bits (56), Expect = 0.34
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 317 LYDCSADNEDELSFRE-GEVIVVINERTEDDNWMEGQVEGTSRR 359
           +Y CSA N+   S R  G+V V++    E   + EG  EG   R
Sbjct: 586 VYTCSARNKQGHSARRSGDVAVIVPPIIEPFTFQEGLSEGMRTR 629


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 223  SSLHNGAFHRDEPTPPPRKECSSQ 246
            S+L   A+ + +P PPP    S Q
Sbjct: 1343 STLERTAWRQQQPPPPPPPPSSGQ 1366


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 234 EPTPPPRKECSSQDSSLELCDITDSCLDESRL 265
           +P PPP    SS   S +L  I D    E+ +
Sbjct: 340 KPAPPPPPPSSSGPDSAKLDKIFDIATKENAM 371


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.131    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,945
Number of Sequences: 429
Number of extensions: 2658
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 372
length of database: 140,377
effective HSP length: 59
effective length of query: 313
effective length of database: 115,066
effective search space: 36015658
effective search space used: 36015658
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)