Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002672-TA|BGIBMGA002672-PA|undefined
         (147 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             28   0.046
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   2.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.0  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   3.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   4.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.0  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.9 bits (59), Expect = 0.046
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 65  LKGDLRGVKGDLKRPFDKASKDYESKYLKIEKEKKSQAKEAGLIRSEVTSAEIADEMEKE 124
           L  D  G    L+R  D+ S++Y +         K + +E  L R+ VT   +   ++KE
Sbjct: 304 LDEDADGAVSPLRREKDRGSREYPTSNATDTDGTKERTEEVALDRTPVTQGLL--RVKKE 361

Query: 125 RRLFQLQMC 133
             L +   C
Sbjct: 362 EELQEAPSC 370


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 62  DSLLKGDLRGVKGDLKRPFDKASKDYESKYLKIEKEKKSQAKEAGLI 108
           D +L G+    +  L+R  DK     E   L +  E++       LI
Sbjct: 421 DVILVGEQARAQDGLRRRMDKLKSSIEEANLAVSAEREKNVSLLHLI 467


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 93  KIEKEKKSQAKEAGLIRSEVTSAEIADEME 122
           +I K+K S A   G   S +T+ EI  E+E
Sbjct: 268 QISKKKLSPATPKGSKCSMITTPEIKKEVE 297


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 2/28 (7%)

Query: 105 AGLIRSEVTSAEIADEMEKERRLFQLQM 132
           AG++   ++ AE+ D+M+KE++L  L+M
Sbjct: 489 AGIVY-HLSKAEL-DKMDKEKKLEDLEM 514


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 15/43 (34%), Positives = 19/43 (44%)

Query: 46  MKTLMQNINNIVMFPVDSLLKGDLRGVKGDLKRPFDKASKDYE 88
           +K + Q  N+ V   V       L GV G  +  FD  SKD E
Sbjct: 352 IKYVQQTTNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSKDVE 394


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 86  DYESKYLKIEKEKKSQAK 103
           DY+S Y+   K KK+ +K
Sbjct: 320 DYDSTYIPKVKNKKAGSK 337


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.342 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,786
Number of Sequences: 429
Number of extensions: 1427
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 147
length of database: 140,377
effective HSP length: 52
effective length of query: 95
effective length of database: 118,069
effective search space: 11216555
effective search space used: 11216555
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)