GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002672-TA|BGIBMGA002672-PA|undefined
         (147 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   1.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   1.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   1.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   1.5  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)

Query: 74  GDLKRPFDKASKDYE 88
           G+L+R FDK  K++E
Sbjct: 167 GELRRAFDKEGKNWE 181


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 60  PVDSLLKGDLRGVKGDLKRPFDKASKDYESKYLKIEKEKKS 100
           P D L++ D R  +     P  + +K   S  +K+E  + S
Sbjct: 156 PFDKLIEEDSRSNEDTSLHPSPRITKKANSVSVKVENRRNS 196


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 60  PVDSLLKGDLRGVKGDLKRPFDKASKDYESKYLKIEKEKKS 100
           P D L++ D R  +     P  + +K   S  +K+E  + S
Sbjct: 104 PFDKLIEEDSRSNEDTSLHPSPRITKKANSVSVKVENRRNS 144


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 60  PVDSLLKGDLRGVKGDLKRPFDKASKDYESKYLKIEKEKKS 100
           P D L++ D R  +     P  + +K   S  +K+E  + S
Sbjct: 287 PFDKLIEEDSRSNEDTSLHPSPRITKKANSVSVKVENRRNS 327


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.130    0.342 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,342
Number of Sequences: 317
Number of extensions: 912
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 147
length of database: 114,650
effective HSP length: 51
effective length of query: 96
effective length of database: 98,483
effective search space:  9454368
effective search space used:  9454368
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)