GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002671-TA|BGIBMGA002671-PA|IPR001247|Exoribonuclease
         (277 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    26   0.27 
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    22   4.4  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    22   4.4  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   5.8  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   5.8  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    22   5.8  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   7.7  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    21   7.7  

>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 164 RIPLVKALLMDGGNVDLQLSDDPYDFKF 191
           R P +K LL  GGN D+   D+  + K+
Sbjct: 95  RFPKLKVLLSVGGNADVSGQDEEKNIKY 122


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 138 DILILECGGNLFDAVSLATKAALFNTR 164
           ++LI + GG  FD   L  +  +F  +
Sbjct: 22  NVLIFDLGGGTFDVSLLTIEEGIFEVK 48


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 138 DILILECGGNLFDAVSLATKAALFNTR 164
           ++LI + GG  FD   L  +  +F  +
Sbjct: 22  NVLIFDLGGGTFDVSLLTIEEGIFEVK 48


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)

Query: 232 GNSKSYCADKGASNITDVDI 251
           GN  SY   KG   I  VDI
Sbjct: 388 GNKASYARAKGLGGIAIVDI 407


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 43  SHASGSARLRLANTDILVGIKTE 65
           S +S S+R RLA  D+L+  K+E
Sbjct: 257 SSSSYSSRKRLAMLDLLLKYKSE 279


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 43  SHASGSARLRLANTDILVGIKTE 65
           S +S S+R RLA  D+L+  K+E
Sbjct: 257 SSSSYSSRKRLAMLDLLLKYKSE 279


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 120 DLKQLCIVEGKQCWKLYVDI 139
           D+K L  V  K+C+K+ V I
Sbjct: 252 DVKTLTTVVEKECYKMKVTI 271


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 120 DLKQLCIVEGKQCWKLYVDI 139
           D+K L  V  K+C+K+ V I
Sbjct: 178 DVKTLTTVVEKECYKMKVTI 197


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.135    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,638
Number of Sequences: 317
Number of extensions: 2408
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 277
length of database: 114,650
effective HSP length: 56
effective length of query: 221
effective length of database: 96,898
effective search space: 21414458
effective search space used: 21414458
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)