GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002671-TA|BGIBMGA002671-PA|IPR001247|Exoribonuclease
         (277 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe...    92   9e-20
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c...    87   3e-18
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|...    63   5e-11
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   3.0  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    27   3.9  
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom...    26   5.2  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    26   5.2  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   5.2  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   6.8  

>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 91.9 bits (218), Expect = 9e-20
 Identities = 51/158 (32%), Positives = 82/158 (51%)

Query: 9   TEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDT 68
           T + ++ H + +D RSDGRS  ++R + +  + +S A+GSA +R      + GIK EI  
Sbjct: 21  TPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKAEIAE 80

Query: 69  PKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIVE 128
           P  + P+ G I   ++ S   + +F+     +LA  +S  + +    S   +L+ LCI E
Sbjct: 81  PFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQSLCIFE 140

Query: 129 GKQCWKLYVDILILECGGNLFDAVSLATKAALFNTRIP 166
            K  W LY DI+ L   G+ FD    A  AAL   ++P
Sbjct: 141 KKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLP 178


>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 291

 Score = 87.0 bits (206), Expect = 3e-18
 Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 9/229 (3%)

Query: 7   SSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEI 66
           S   K F+++ +++  R DGR   D+R +E++        G   +   +T ++  I TEI
Sbjct: 8   SLNNKEFVLNSLEKGLRLDGRQLSDFRSLEIQ---FGKEYGQVDVSFGHTRVMARITTEI 64

Query: 67  DTPKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCI 126
             P  D+P  G      + +  A   FE     +    IS  +++A   S A D + LCI
Sbjct: 65  TKPYTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLCI 124

Query: 127 VEGKQCWKLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSDDP 186
           + G++CW +   +  +   GNL DA  +A  AAL + R P    L + G  V +   ++ 
Sbjct: 125 ISGQKCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRP---ELTVVGEEVTVHPVEER 181

Query: 187 YDFKFLDVGSAPLLVTLC--KIGEKCVVDPSAEEESCSVISLIVGITGN 233
                L +   P+ VT      GE  +VD + EEE     S+ + +  N
Sbjct: 182 VPVP-LSILHMPICVTFSFFNNGELAIVDATLEEEDLCNGSMTITLNKN 229


>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 55/223 (24%), Positives = 109/223 (48%), Gaps = 25/223 (11%)

Query: 23  RSDGRSNIDYRPMELETDVVSHASGSARLRLANT-DILVGIKTEIDTPKPDKPDMGKIEF 81
           R+DGRS    RP+  + DV+   +GSAR++ A++ +I++G+K E+    P+    GK   
Sbjct: 23  RNDGRSIDQLRPLSGQVDVLPGTNGSARVKWASSVEIVIGVKAEVGDATPEG---GKYVA 79

Query: 82  FVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIVEGKQCWKLYVDILI 141
            V+ S + +   + R  + + S +++ +Q   ++     LK        + W ++VD ++
Sbjct: 80  SVEISPSVS--IQNRETDEIPSFLTSALQDLLNALAVDYLK----FTPSKAWIIHVDAVV 133

Query: 142 LECGG---NLFDAVSLATKAALFNTRIPLVKALLMDG---GNVDLQLSDDPYDFKFLDVG 195
           +       N+  A+SLA   AL  TR+P +    +     G+   + S++ YD       
Sbjct: 134 ILSSSPYENILSALSLAAYLALQTTRLPKISTPNVTDITIGSTKYEPSEE-YDVDSEWEN 192

Query: 196 SAPL--------LVTLCKIGEKCVVDPSAEEESCSVISLIVGI 230
           + PL        ++ +  I +  +VDP+ EE S + ++  +G+
Sbjct: 193 ALPLQGLELMSVIILVSSIDQVIIVDPTIEESSVAQVTYAIGV 235


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/24 (54%), Positives = 19/24 (79%), Gaps = 2/24 (8%)

Query: 198 PLLVT-LCKIGEKCVVDPSAEEES 220
           P++VT LC+IG+KC VD S+E  +
Sbjct: 554 PVIVTKLCRIGQKC-VDNSSESRT 576


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/63 (28%), Positives = 27/63 (42%)

Query: 186 PYDFKFLDVGSAPLLVTLCKIGEKCVVDPSAEEESCSVISLIVGITGNSKSYCADKGASN 245
           PY F+ LD         L +IG   + D  AE    +  ++++ I  N  S   DK   +
Sbjct: 395 PYAFRLLDFFFLEGPRVLFQIGMAILYDNEAEIMKATEDTMLISILKNYFSSLGDKAYKD 454

Query: 246 ITD 248
            TD
Sbjct: 455 ATD 457


>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 242

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 20 EDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDIL 59
          E  R+DGR   + R  +    +    +GSA + L NT +L
Sbjct: 10 EGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVL 49


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 195 GSAPLLVTLCKIGEKCVVDPSAEEESCSVISLIVGITGNSKSYCADKGASNITD 248
           GS P  +  C +  KCV D  ++  +  +IS   G+  N+K  CA  G S  T+
Sbjct: 162 GSLPNWIGHCFV-LKCVDD--SDSATMGIISRSAGLGQNTKQICACTGKSLWTE 212


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 51   LRLANTDILVGIKTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQ 110
            LR  ++ + V     IDT      ++GK  F+   S      +    G++  S + NT+ 
Sbjct: 1285 LRSVSSKVKVVFGLPIDTIY-QTTEVGK--FYASTSVAVKQMYAESEGDSYVSEVLNTLS 1341

Query: 111  RAYHSSQAFDLKQLCI 126
               H +  + L   C+
Sbjct: 1342 EVVHCTSTYALSSACL 1357


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 179 DLQLSDDPYDFKFLDVGSAPLLVTLCK-IGEKCVVDPSAEEE 219
           DLQ +  P+   F  + +A LL    K IGEKC  D   +EE
Sbjct: 77  DLQKAVKPHVDSFNALTNAGLLNYAVKEIGEKCAFDSITQEE 118


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,272,543
Number of Sequences: 5004
Number of extensions: 52828
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 11
length of query: 277
length of database: 2,362,478
effective HSP length: 72
effective length of query: 205
effective length of database: 2,002,190
effective search space: 410448950
effective search space used: 410448950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)