Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002671-TA|BGIBMGA002671-PA|IPR001247|Exoribonuclease
(277 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0002 + 12119832-12120003,12120620-12120866,12121011-121210... 88 6e-18
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494... 83 2e-16
11_03_0222 + 11880333-11880551,11880667-11880736,11880839-118809... 71 1e-12
03_06_0648 + 35280492-35280645,35281742-35281820,35282491-352825... 39 0.004
08_01_0115 - 929926-930012,930093-930242,930336-930424,930696-93... 39 0.005
08_02_0077 - 11979497-11979654,11980012-11982178 35 0.083
03_06_0727 - 35766252-35766481,35766592-35766721,35767049-357671... 32 0.44
01_07_0321 + 42715969-42716233,42716320-42716399,42716545-427166... 31 1.3
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132... 29 5.4
07_01_0488 - 3678329-3678577,3678769-3678810,3678891-3678944,367... 28 7.2
>12_02_0002 +
12119832-12120003,12120620-12120866,12121011-12121050,
12121584-12121676,12124850-12124928,12124973-12125019,
12126178-12126266,12126353-12126424,12126617-12126710,
12127167-12127206,12127321-12127445,12130472-12130615,
12131510-12131740
Length = 490
Score = 88.2 bits (209), Expect = 6e-18
Identities = 48/128 (37%), Positives = 72/128 (56%), Gaps = 2/128 (1%)
Query: 118 AFDLKQLCIVEGKQCWKLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGN 177
A DL L +V+GK CW LY+D L++ GNL DA++ A K AL +T IP V L +
Sbjct: 327 AIDLSSLIVVDGKVCWDLYIDGLVVSSDGNLLDALAAAIKVALSDTGIPKVNVSLSATTD 386
Query: 178 VDLQLSDDPYDFKFLDVGSAPLLVTLCKIGEKCVVDPSAEEES--CSVISLIVGITGNSK 235
+ +++ +F D S P++VTL K+G+ +VD ++EEES S +S+ V G +
Sbjct: 387 EEPEVNVSDEEFLQFDTSSVPVIVTLTKVGKHYIVDATSEEESQMSSAVSVSVNRHGQIR 446
Query: 236 SYCADKGA 243
GA
Sbjct: 447 GLTKRGGA 454
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 63 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQR 111
+ E+ P PD GK+ FVDCS A P FEGRG E ++ + +QR
Sbjct: 153 QAELGKPSILHPDKGKVSIFVDCSPTAAPMFEGRGSEEFSAELCVALQR 201
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 6 LSSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASG 47
LS EK FI G+ +D R+DGR + +R + +ET V+ G
Sbjct: 4 LSEGEKHFIRGGIAQDLRTDGRRRLQFRAISVETGVIPQVFG 45
>02_04_0185 -
20748206-20748405,20749067-20749232,20749373-20749471,
20749487-20749561,20749663-20749743,20750121-20750274,
20750330-20750425,20750518-20750727,20750746-20750957
Length = 430
Score = 83.4 bits (197), Expect = 2e-16
Identities = 73/244 (29%), Positives = 115/244 (47%), Gaps = 22/244 (9%)
Query: 47 GSARLRLANTDILVGIKTEIDTPKPDKPDMGKIEFFVDCSANATPEFE-GRGGENLASSI 105
GSA ++L +T ++ ++ P D+P+ G + F + S A P FE GR GE+ A +
Sbjct: 74 GSAEVQLGDTRVMGYATAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGES-AIEL 132
Query: 106 SNTMQRAYHSSQAFDLKQLCIVEGKQCWKLYVDILILECGG-------------NLFDAV 152
+ R S+A D++ LC+V GK W + VD+ IL+ GG NL DA
Sbjct: 133 GRVVDRGLRESRAVDMESLCVVAGKHVWSVRVDLHILDNGGELNVPDAMVLSLRNLIDAA 192
Query: 153 SLATKAALFNTRIPLVKALLMDGGNVDLQLSDDPYDFKFLDVGSAPLLVTLCKIGEK--C 210
++A AAL R P DG V + + D L + P+ VT GE
Sbjct: 193 NIAALAALSTFRRPECTVGGEDGQQVTVH-DPEVRDPLPLTIHHLPIAVTFAYFGEGNIM 251
Query: 211 VVDPSAEEESCSVISLIVGITGNSKSYCADKGASNITDVDIKCSTISMNGPGSLAPKTLK 270
V+DP+ +EE +V+ + T NS A G ++ V ++C I+ + K +K
Sbjct: 252 VIDPTYKEE--AVMGGRMTATINSNGDKAG-GEGVMSSVIMQCLRIASVKAADITSK-IK 307
Query: 271 NAIH 274
N ++
Sbjct: 308 NEVN 311
>11_03_0222 +
11880333-11880551,11880667-11880736,11880839-11880944,
11881490-11881556,11881597-11881692
Length = 185
Score = 70.5 bits (165), Expect = 1e-12
Identities = 46/129 (35%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 13 FIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDTPKPD 72
F+ ++E R D R + RP + VS A GSA +RL +T +L IK E+ +P +
Sbjct: 30 FLERHLRESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASIKLEVMSPSGE 89
Query: 73 KPDMGKI--EFFVD--CSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIVE 128
PD G I EF + CS P GR E +A IS ++ SS +LK+LC++
Sbjct: 90 APDEGSIAVEFHMPPICSPLVRP---GRPAE-VAPVISKNLEDILMSSGMLNLKELCLIS 145
Query: 129 GKQCWKLYV 137
GK W Y+
Sbjct: 146 GKASWLAYL 154
>03_06_0648 +
35280492-35280645,35281742-35281820,35282491-35282593,
35282695-35282815,35283144-35283232,35283324-35283473,
35285842-35287161
Length = 671
Score = 39.1 bits (87), Expect = 0.004
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 23 RSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDTPKPD-KPDMGKIEF 81
R+DGRS D RP ++T + ASGSA T ++V + ++ K D G++
Sbjct: 39 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 98
Query: 82 FVDCSANATPEFEGRGGEN 100
V + ATP G+G +N
Sbjct: 99 NVSYTTFATP-IRGQGTDN 116
>08_01_0115 -
929926-930012,930093-930242,930336-930424,930696-930816,
930918-931020,931685-931763,933879-934038
Length = 262
Score = 38.7 bits (86), Expect = 0.005
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 23 RSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDTPKPD-KPDMGKIEF 81
R+DGRS D RP ++T + ASGSA T ++V + ++ K D G++
Sbjct: 41 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 100
Query: 82 FVDCSANATPEFEGRGGEN 100
V + ATP G+G +N
Sbjct: 101 NVSYTTFATP-IRGQGMDN 118
>08_02_0077 - 11979497-11979654,11980012-11982178
Length = 774
Score = 34.7 bits (76), Expect = 0.083
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 31 DYRPME-LETDVVSHASGSARLRLANTDILVGIKTEIDTPKPDKPDMGKIEFFVDCSANA 89
DY E E + +G R D V +K EI T +P+ +GK ++ +D N
Sbjct: 201 DYEQSEKTELKINGQENGENRAGKEQFDCNVPVKQEIRTDQPEANGVGKHQYHMDDKENK 260
Query: 90 TPEFEGRGGENLASSISNTMQRA 112
+ EG+ G+ S ++RA
Sbjct: 261 GLDKEGKNGKPGKHSAGKKIRRA 283
>03_06_0727 -
35766252-35766481,35766592-35766721,35767049-35767116,
35767179-35767217,35767677-35767761,35768097-35768197,
35768292-35768511
Length = 290
Score = 32.3 bits (70), Expect = 0.44
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 20 EDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGI-KTEIDTPKPDKPDMGK 78
E+ R+DGR+ RP + + A GSAR +T +L + + T K + P+
Sbjct: 2 EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKAS 61
Query: 79 IE 80
IE
Sbjct: 62 IE 63
>01_07_0321 +
42715969-42716233,42716320-42716399,42716545-42716613,
42716710-42716791,42716902-42716996,42717129-42717203,
42717385-42717436,42717442-42717630,42717667-42717752,
42717827-42717902,42718001-42718164,42718307-42718426
Length = 450
Score = 30.7 bits (66), Expect = 1.3
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 192 LDVGSAPLLVTLCKIGEKCVVDPSAEEESCSVISLIVGITGNSKSYCADKGASNITDVDI 251
L +APL GE+ P E+ + +++G TG KS A AS+ V++
Sbjct: 4 LAASAAPLPSADPDAGEESSHSPPPPEKGLRKVVVVMGATGAGKSRLAVDLASHFAGVEV 63
Query: 252 KCSTISMNGPGSLAPKTLKNAIHQ 275
S SM G L T K +H+
Sbjct: 64 -VSADSMQVYGGLDVLTNKVPLHE 86
>12_01_0179 -
1319291-1319332,1319884-1320579,1322759-1323207,
1323291-1324903,1324991-1325077,1326983-1327251
Length = 1051
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 62 IKTEIDTPKPDKPDMGKIEFFVDCSA--NATPEFEGRGGENLASSISNTMQR 111
+K E + +P PD G F+D S+ ++ P F E L SS SN R
Sbjct: 712 VKLEDELSEPLSPDSGTGTHFIDGSSVEDSDPRFAQLNDEALVSSTSNATCR 763
>07_01_0488 -
3678329-3678577,3678769-3678810,3678891-3678944,
3679149-3679212,3679316-3679410,3679477-3679584,
3679679-3679752,3680338-3680410,3680539-3680586,
3680694-3680877,3681262-3681440,3682167-3682259,
3682738-3682851,3683570-3683644,3683852-3684112,
3684821-3684934,3685473-3685529,3686668-3686863,
3686922-3686986,3687112-3687195,3688155-3688223,
3688545-3688844
Length = 865
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 23 RSDGRSNIDYRPMELETDVVSHASGSARLRLANTDIL 59
RSDGRS + RP+ + ++ A GSA T L
Sbjct: 411 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQAL 447
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,560,693
Number of Sequences: 37544
Number of extensions: 365823
Number of successful extensions: 650
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 636
Number of HSP's gapped (non-prelim): 15
length of query: 277
length of database: 14,793,348
effective HSP length: 81
effective length of query: 196
effective length of database: 11,752,284
effective search space: 2303447664
effective search space used: 2303447664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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