GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002671-TA|BGIBMGA002671-PA|IPR001247|Exoribonuclease
         (277 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y17699-1|CAA76819.1|   81|Anopheles gambiae hypothetical protein...    27   0.59 
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    27   0.78 
AF543192-1|AAN40409.1|  636|Anopheles gambiae amino acid transpo...    24   5.5  

>Y17699-1|CAA76819.1|   81|Anopheles gambiae hypothetical protein
          protein.
          Length = 81

 Score = 27.1 bits (57), Expect = 0.59
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 67 DTPKPDKPDMGKIEFFVDCSANATPEFEG 95
          D+PK DKPD+  ++F VD   N      G
Sbjct: 50 DSPK-DKPDIDPVDFLVDVIKNGMKRVSG 77


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 26.6 bits (56), Expect = 0.78
 Identities = 16/57 (28%), Positives = 24/57 (42%)

Query: 18  VQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDTPKPDKP 74
           +Q+D R   + + + R   L+    S AS        NT I  G +  +  PK D P
Sbjct: 75  MQKDRREFNKRSHEVRAFLLKNSSHSGASSGLNTTQVNTTISAGTQNHLRLPKVDLP 131


>AF543192-1|AAN40409.1|  636|Anopheles gambiae amino acid
           transporter Ag_AAT8 protein.
          Length = 636

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 51  LRLANTDILVGIKTEIDTPKPDK-PDMGKIEFFVDCSANATPEFEGRGGENLASSIS 106
           L L + ++ VG KT +  P P    D G++   +    NA  +  G+G E L S I+
Sbjct: 39  LALTDVELAVGGKT-VPRPTPATGEDAGRVPTSIIPEPNADRDQWGKGVEFLLSCIA 94


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.135    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 295,695
Number of Sequences: 2123
Number of extensions: 12710
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 3
length of query: 277
length of database: 516,269
effective HSP length: 63
effective length of query: 214
effective length of database: 382,520
effective search space: 81859280
effective search space used: 81859280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)