Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002671-TA|BGIBMGA002671-PA|IPR001247|Exoribonuclease
(277 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC012831-1|AAH12831.1| 291|Homo sapiens exosome component 7 pro... 301 2e-81
D29958-1|BAA06226.1| 290|Homo sapiens KIAA0116 protein. 299 7e-81
BC020773-1|AAH20773.1| 276|Homo sapiens exosome component 8 pro... 103 9e-22
AF025438-1|AAC39558.1| 265|Homo sapiens Opa-interacting protein... 103 9e-22
AL138706-8|CAI14013.1| 275|Homo sapiens RP11-421P11.3 protein. 101 2e-21
AJ517294-1|CAD56889.1| 456|Homo sapiens polymyositis/scleroderm... 97 4e-20
AJ505989-1|CAD44530.1| 439|Homo sapiens polymyositis/scleroderm... 97 4e-20
U09215-1|AAA18832.1| 372|Homo sapiens PM-Scl-75 autoantigen pro... 66 1e-10
M58460-1|AAA58384.1| 355|Homo sapiens autoantigen protein. 66 1e-10
AC079341-2|AAY40968.1| 355|Homo sapiens unknown protein. 66 1e-10
BC121179-1|AAI21180.1| 722|Homo sapiens glucosamine (UDP-N-acet... 33 1.1
AY531128-1|AAS59259.1| 722|Homo sapiens UDP-N-acetylglucosamine... 33 1.1
AY531127-1|AAS59258.1| 722|Homo sapiens UDP-N-acetylglucosamine... 33 1.1
AY531126-1|AAS59257.1| 722|Homo sapiens UDP-N-acetylglucosamine... 33 1.1
AL158830-7|CAD13389.1| 722|Homo sapiens glucosamine (UDP-N-acet... 33 1.1
AJ238764-1|CAB42607.1| 722|Homo sapiens UDP-N-acetylglucosamine... 33 1.1
AF317635-1|AAG31661.1| 722|Homo sapiens UDP-N-acetylglucosamine... 33 1.1
AF155663-1|AAD38197.1| 722|Homo sapiens UDP-N-acetylglucosamine... 33 1.1
AF051852-1|AAD32251.1| 722|Homo sapiens UDP-N-acetylglucosamine... 33 1.1
BC053660-1|AAH53660.1| 783|Homo sapiens polyribonucleotide nucl... 33 1.4
AY027528-1|AAK13047.1| 783|Homo sapiens 3'-5' RNA exonuclease p... 33 1.4
AK027437-1|BAB55109.1| 504|Homo sapiens protein ( Homo sapiens ... 33 1.4
AJ458465-1|CAD30289.1| 783|Homo sapiens polynucleotide phosphor... 33 1.4
AC015982-3|AAY24271.1| 783|Homo sapiens unknown protein. 33 1.4
D79992-1|BAA11487.2| 2090|Homo sapiens KIAA0170 protein. 30 7.7
BX248307-2|CAM25929.1| 2089|Homo sapiens mediator of DNA damage ... 30 7.7
BC131491-1|AAI31492.1| 778|Homo sapiens MDC1 protein protein. 30 7.7
BA000025-70|BAB63322.1| 2090|Homo sapiens KIAA0170 protein. 30 7.7
AL845353-22|CAI41891.1| 2089|Homo sapiens mediator of DNA damage... 30 7.7
AL845353-21|CAI41890.1| 1244|Homo sapiens mediator of DNA damage... 30 7.7
AL662848-3|CAI17440.1| 2089|Homo sapiens mediator of DNA damage ... 30 7.7
AL662797-7|CAI18195.1| 2089|Homo sapiens mediator of DNA damage ... 30 7.7
AB103605-1|BAF31266.1| 2089|Homo sapiens KIAA0170 protein protein. 30 7.7
AB088099-1|BAC54931.1| 2089|Homo sapiens homologue to Drosophila... 30 7.7
>BC012831-1|AAH12831.1| 291|Homo sapiens exosome component 7
protein.
Length = 291
Score = 301 bits (739), Expect = 2e-81
Identities = 141/241 (58%), Positives = 183/241 (75%)
Query: 1 MAGLLLSSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILV 60
MA + LS EKV+IVHGVQED R DGR DYR +E+ETDVVS+ SGSAR++L +TDILV
Sbjct: 1 MASVTLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILV 60
Query: 61 GIKTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFD 120
G+K E+ TPK +KP+ G +EFFVDCSA+ATPEFEGRGG++L + I+NT+ R +++ + D
Sbjct: 61 GVKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVD 120
Query: 121 LKQLCIVEGKQCWKLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDL 180
LK LCI + CW LYVD+L+LECGGNLFDA+S+A KAALFNTRIP V+ L + G+ D+
Sbjct: 121 LKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDI 180
Query: 181 QLSDDPYDFKFLDVGSAPLLVTLCKIGEKCVVDPSAEEESCSVISLIVGITGNSKSYCAD 240
+LSDDPYD L V + P +VTLCKIG + VVD + +EE+CS+ SL+V +T C
Sbjct: 181 ELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMR 240
Query: 241 K 241
K
Sbjct: 241 K 241
>D29958-1|BAA06226.1| 290|Homo sapiens KIAA0116 protein.
Length = 290
Score = 299 bits (734), Expect = 7e-81
Identities = 140/240 (58%), Positives = 182/240 (75%)
Query: 2 AGLLLSSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVG 61
A + LS EKV+IVHGVQED R DGR DYR +E+ETDVVS+ SGSAR++L +TDILVG
Sbjct: 1 ASVTLSEAEKVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVG 60
Query: 62 IKTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDL 121
+K E+ TPK +KP+ G +EFFVDCSA+ATPEFEGRGG++L + I+NT+ R +++ + DL
Sbjct: 61 VKAEMGTPKLEKPNEGYLEFFVDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDL 120
Query: 122 KQLCIVEGKQCWKLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQ 181
K LCI + CW LYVD+L+LECGGNLFDA+S+A KAALFNTRIP V+ L + G+ D++
Sbjct: 121 KTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIE 180
Query: 182 LSDDPYDFKFLDVGSAPLLVTLCKIGEKCVVDPSAEEESCSVISLIVGITGNSKSYCADK 241
LSDDPYD L V + P +VTLCKIG + VVD + +EE+CS+ SL+V +T C K
Sbjct: 181 LSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRK 240
>BC020773-1|AAH20773.1| 276|Homo sapiens exosome component 8
protein.
Length = 276
Score = 103 bits (246), Expect = 9e-22
Identities = 70/238 (29%), Positives = 113/238 (47%), Gaps = 9/238 (3%)
Query: 18 VQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDTPKPDKPDMG 77
++E+ R DGR ++R + +S A GSA ++L NT ++ G+K E P D PD G
Sbjct: 18 LKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKG 77
Query: 78 KIEFFVDCSANATPEFE-GRGGENLASSISNTMQRAYHSSQAFDLKQLCIVEGKQCWKLY 136
+ VD + F G GE A S + +SQ + LCI GK W LY
Sbjct: 78 YVVPNVDLPPLCSSRFRSGPPGEE-AQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 136
Query: 137 VDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSDDPYDFKFLDVGS 196
D++ L+ GN+ DA + A AAL N ++P V + + ++ L Y L++ +
Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEV-TINEETALAEVNLKKKSY----LNIRT 191
Query: 197 APLLVTLCKIGEK-CVVDPSAEEESCSVISLIVGITGNSKSYCADK-GASNITDVDIK 252
P+ + + +VDP+ EEE + +L + + K C K G S +T ++
Sbjct: 192 HPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGSGLTGAKLQ 249
>AF025438-1|AAC39558.1| 265|Homo sapiens Opa-interacting protein
OIP2 protein.
Length = 265
Score = 103 bits (246), Expect = 9e-22
Identities = 70/238 (29%), Positives = 113/238 (47%), Gaps = 9/238 (3%)
Query: 18 VQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDTPKPDKPDMG 77
++E+ R DGR ++R + +S A GSA ++L NT ++ G+K E P D PD G
Sbjct: 16 LKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKG 75
Query: 78 KIEFFVDCSANATPEFE-GRGGENLASSISNTMQRAYHSSQAFDLKQLCIVEGKQCWKLY 136
+ VD + F G GE A S + +SQ + LCI GK W LY
Sbjct: 76 YVVPNVDLPPLCSSRFRSGPPGEE-AQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 134
Query: 137 VDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSDDPYDFKFLDVGS 196
D++ L+ GN+ DA + A AAL N ++P V + + ++ L Y L++ +
Sbjct: 135 CDLICLDYDGNILDACTFALLAALKNVQLPEV-TINEETALAEVNLKKKSY----LNIRT 189
Query: 197 APLLVTLCKIGEK-CVVDPSAEEESCSVISLIVGITGNSKSYCADK-GASNITDVDIK 252
P+ + + +VDP+ EEE + +L + + K C K G S +T ++
Sbjct: 190 HPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGGSGLTGAKLQ 247
>AL138706-8|CAI14013.1| 275|Homo sapiens RP11-421P11.3 protein.
Length = 275
Score = 101 bits (243), Expect = 2e-21
Identities = 68/237 (28%), Positives = 111/237 (46%), Gaps = 8/237 (3%)
Query: 18 VQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDTPKPDKPDMG 77
++E+ R DGR ++R + +S A GSA ++L NT ++ G+K E P D PD G
Sbjct: 18 LKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPSTDAPDKG 77
Query: 78 KIEFFVDCSANATPEFE-GRGGENLASSISNTMQRAYHSSQAFDLKQLCIVEGKQCWKLY 136
+ VD + F G GE A S + +SQ + LCI GK W LY
Sbjct: 78 YVVPNVDLPPLCSSRFRSGPPGEE-AQVASQFIADVIENSQIIQKEDLCISPGKLVWVLY 136
Query: 137 VDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSDDPYDFKFLDVGS 196
D++ L+ GN+ DA + A AAL N ++P V + + ++ L Y L++ +
Sbjct: 137 CDLICLDYDGNILDACTFALLAALKNVQLPEV-TINEETALAEVNLKKKSY----LNIRT 191
Query: 197 APLLVTLCKIGEK-CVVDPSAEEESCSVISLIVGITGNSKSYCADKGASNITDVDIK 252
P+ + + +VDP+ EEE + +L + + K C K +T ++
Sbjct: 192 HPVATSFAVFDDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKPGIGLTGAKLQ 248
>AJ517294-1|CAD56889.1| 456|Homo sapiens polymyositis/scleroderma
autoantigen 1 protein.
Length = 456
Score = 97.5 bits (232), Expect = 4e-20
Identities = 71/257 (27%), Positives = 123/257 (47%), Gaps = 13/257 (5%)
Query: 6 LSSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTE 65
LS+ E+ F++ ++E R DGR DYR + + G + L T +L + E
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGT---DYGCCIVELGKTRVLGQVSCE 62
Query: 66 IDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLC 125
+ +PK ++ G + F ++ S A P FE +L ++ M+R +S+ D + LC
Sbjct: 63 LVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLC 122
Query: 126 IVEGKQCWKLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSDD 185
+V G++ W++ VD+ +L GN+ DA S+A AL + R P V + G V L ++
Sbjct: 123 VVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVS---VQGDEVTLYTPEE 179
Query: 186 PYDFKFLDVGSAPLLVTLC--KIGEKCVVDPSAEEESCSVISLIVGITGNSKSYCADKGA 243
D L + P+ V+ + G +VDP+ EE + L+V + C + +
Sbjct: 180 -RDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERV-MDGLLVIAMNKHREICTIQSS 237
Query: 244 SNI---TDVDIKCSTIS 257
I D ++CS I+
Sbjct: 238 GGIMLLKDQVLRCSKIA 254
>AJ505989-1|CAD44530.1| 439|Homo sapiens polymyositis/scleroderma
autoantigen 1 protein.
Length = 439
Score = 97.5 bits (232), Expect = 4e-20
Identities = 71/257 (27%), Positives = 123/257 (47%), Gaps = 13/257 (5%)
Query: 6 LSSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTE 65
LS+ E+ F++ ++E R DGR DYR + + G + L T +L + E
Sbjct: 6 LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGT---DYGCCIVELGKTRVLGQVSCE 62
Query: 66 IDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLC 125
+ +PK ++ G + F ++ S A P FE +L ++ M+R +S+ D + LC
Sbjct: 63 LVSPKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLC 122
Query: 126 IVEGKQCWKLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSDD 185
+V G++ W++ VD+ +L GN+ DA S+A AL + R P V + G V L ++
Sbjct: 123 VVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVS---VQGDEVTLYTPEE 179
Query: 186 PYDFKFLDVGSAPLLVTLC--KIGEKCVVDPSAEEESCSVISLIVGITGNSKSYCADKGA 243
D L + P+ V+ + G +VDP+ EE + L+V + C + +
Sbjct: 180 -RDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERV-MDGLLVIAMNKHREICTIQSS 237
Query: 244 SNI---TDVDIKCSTIS 257
I D ++CS I+
Sbjct: 238 GGIMLLKDQVLRCSKIA 254
>U09215-1|AAA18832.1| 372|Homo sapiens PM-Scl-75 autoantigen
protein.
Length = 372
Score = 66.1 bits (154), Expect = 1e-10
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 10/174 (5%)
Query: 89 ATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIVEGKQCWKLYVDILILECGGNL 148
A P FE +L ++ M+R +S+ D + LC+V G++ W++ VD+ +L GN+
Sbjct: 2 AAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNI 61
Query: 149 FDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSDDPYDFKFLDVGSAPLLVTLC--KI 206
DA S+A AL + R P V + G V L ++ D L + P+ V+ +
Sbjct: 62 IDAASIAAIVALCHFRRPDVS---VQGDEVTLYTPEE-RDPVPLSIHHMPICVSFAFFQQ 117
Query: 207 GEKCVVDPSAEEESCSVISLIVGITGNSKSYCADKGASNI---TDVDIKCSTIS 257
G +VDP+ EE + L+V + C + + I D ++CS I+
Sbjct: 118 GTYLLVDPNEREERV-MDGLLVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 170
>M58460-1|AAA58384.1| 355|Homo sapiens autoantigen protein.
Length = 355
Score = 66.1 bits (154), Expect = 1e-10
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 10/174 (5%)
Query: 89 ATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIVEGKQCWKLYVDILILECGGNL 148
A P FE +L ++ M+R +S+ D + LC+V G++ W++ VD+ +L GN+
Sbjct: 2 AAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNI 61
Query: 149 FDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSDDPYDFKFLDVGSAPLLVTLC--KI 206
DA S+A AL + R P V + G V L ++ D L + P+ V+ +
Sbjct: 62 IDAASIAAIVALCHFRRPDVS---VQGDEVTLYTPEE-RDPVPLSIHHMPICVSFAFFQQ 117
Query: 207 GEKCVVDPSAEEESCSVISLIVGITGNSKSYCADKGASNI---TDVDIKCSTIS 257
G +VDP+ EE + L+V + C + + I D ++CS I+
Sbjct: 118 GTYLLVDPNEREERV-MDGLLVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 170
>AC079341-2|AAY40968.1| 355|Homo sapiens unknown protein.
Length = 355
Score = 66.1 bits (154), Expect = 1e-10
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 10/174 (5%)
Query: 89 ATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQLCIVEGKQCWKLYVDILILECGGNL 148
A P FE +L ++ M+R +S+ D + LC+V G++ W++ VD+ +L GN+
Sbjct: 2 AAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNI 61
Query: 149 FDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSDDPYDFKFLDVGSAPLLVTLC--KI 206
DA S+A AL + R P V + G V L ++ D L + P+ V+ +
Sbjct: 62 IDAASIAAIVALCHFRRPDVS---VQGDEVTLYTPEE-RDPVPLSIHHMPICVSFAFFQQ 117
Query: 207 GEKCVVDPSAEEESCSVISLIVGITGNSKSYCADKGASNI---TDVDIKCSTIS 257
G +VDP+ EE + L+V + C + + I D ++CS I+
Sbjct: 118 GTYLLVDPNEREERV-MDGLLVIAMNKHREICTIQSSGGIMLLKDQVLRCSKIA 170
>BC121179-1|AAI21180.1| 722|Homo sapiens glucosamine
(UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
protein.
Length = 722
Score = 33.1 bits (72), Expect = 1.1
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 134 KLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSD 184
+L DI+I+ G+ FDA++LAT AAL N RI L ++GG V + D
Sbjct: 101 RLKPDIMIVH--GDRFDALALATSAALMNIRI-----LHIEGGEVSGTIDD 144
>AY531128-1|AAS59259.1| 722|Homo sapiens
UDP-N-acetylglucosamine-2-epimerase /
N-acetylmannosamine kinase protein.
Length = 722
Score = 33.1 bits (72), Expect = 1.1
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 134 KLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSD 184
+L DI+I+ G+ FDA++LAT AAL N RI L ++GG V + D
Sbjct: 101 RLKPDIMIVH--GDRFDALALATSAALMNIRI-----LHIEGGEVSGTIDD 144
>AY531127-1|AAS59258.1| 722|Homo sapiens
UDP-N-acetylglucosamine-2-epimerase /
N-acetylmannosamine kinase protein.
Length = 722
Score = 33.1 bits (72), Expect = 1.1
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 134 KLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSD 184
+L DI+I+ G+ FDA++LAT AAL N RI L ++GG V + D
Sbjct: 101 RLKPDIMIVH--GDRFDALALATSAALMNIRI-----LHIEGGEVSGTIDD 144
>AY531126-1|AAS59257.1| 722|Homo sapiens
UDP-N-acetylglucosamine-2-epimerase /
N-acetylmannosamine kinase protein.
Length = 722
Score = 33.1 bits (72), Expect = 1.1
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 134 KLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSD 184
+L DI+I+ G+ FDA++LAT AAL N RI L ++GG V + D
Sbjct: 101 RLKPDIMIVH--GDRFDALALATSAALMNIRI-----LHIEGGEVSGTIDD 144
>AL158830-7|CAD13389.1| 722|Homo sapiens glucosamine
(UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase
protein.
Length = 722
Score = 33.1 bits (72), Expect = 1.1
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 134 KLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSD 184
+L DI+I+ G+ FDA++LAT AAL N RI L ++GG V + D
Sbjct: 101 RLKPDIMIVH--GDRFDALALATSAALMNIRI-----LHIEGGEVSGTIDD 144
>AJ238764-1|CAB42607.1| 722|Homo sapiens
UDP-N-acetylglucosamine-2-epimerase /
N-acetylmannosamine kinase protein.
Length = 722
Score = 33.1 bits (72), Expect = 1.1
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 134 KLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSD 184
+L DI+I+ G+ FDA++LAT AAL N RI L ++GG V + D
Sbjct: 101 RLKPDIMIVH--GDRFDALALATSAALMNIRI-----LHIEGGEVSGTIDD 144
>AF317635-1|AAG31661.1| 722|Homo sapiens UDP-N-acetylglucosamine
2-epimerase protein.
Length = 722
Score = 33.1 bits (72), Expect = 1.1
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 134 KLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSD 184
+L DI+I+ G+ FDA++LAT AAL N RI L ++GG V + D
Sbjct: 101 RLKPDIMIVH--GDRFDALALATSAALMNIRI-----LHIEGGEVSGTIDD 144
>AF155663-1|AAD38197.1| 722|Homo sapiens
UDP-N-acetylglucosamine-2-epimerase/N- acetylmannosamine
kinase protein.
Length = 722
Score = 33.1 bits (72), Expect = 1.1
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 134 KLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSD 184
+L DI+I+ G+ FDA++LAT AAL N RI L ++GG V + D
Sbjct: 101 RLKPDIMIVH--GDRFDALALATSAALMNIRI-----LHIEGGEVSGTIDD 144
>AF051852-1|AAD32251.1| 722|Homo sapiens
UDP-N-acetylglucosamine-2-epimerase protein.
Length = 722
Score = 33.1 bits (72), Expect = 1.1
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 7/51 (13%)
Query: 134 KLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSD 184
+L DI+I+ G+ FDA++LAT AAL N RI L ++GG V + D
Sbjct: 101 RLKPDIMIVH--GDRFDALALATSAALMNIRI-----LHIEGGEVSGTIDD 144
>BC053660-1|AAH53660.1| 783|Homo sapiens polyribonucleotide
nucleotidyltransferase 1 protein.
Length = 783
Score = 32.7 bits (71), Expect = 1.4
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 146 GNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSDDPYDFKFLDVGSAPLLVTLCK 205
G +D L A+ P V A+ +G +V L LSD P++ VG+ + +
Sbjct: 145 GYFYDTQVLCNLLAVDGVNEPDVLAI--NGASVALSLSDIPWNGP---VGAVRIGI---- 195
Query: 206 IGEKCVVDPSAEEESCSVISLIVGITGNSKSYCADKGASNITDVDIKCSTISM 258
I + VV+P+ +E S S ++L+V S+ + A NI D C I +
Sbjct: 196 IDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVMLEASAENILQQDF-CHAIKV 247
>AY027528-1|AAK13047.1| 783|Homo sapiens 3'-5' RNA exonuclease
protein.
Length = 783
Score = 32.7 bits (71), Expect = 1.4
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 146 GNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSDDPYDFKFLDVGSAPLLVTLCK 205
G +D L A+ P V A+ +G +V L LSD P++ VG+ + +
Sbjct: 145 GYFYDTQVLCNLLAVDGVNEPDVLAI--NGASVALSLSDIPWNGP---VGAVRIGI---- 195
Query: 206 IGEKCVVDPSAEEESCSVISLIVGITGNSKSYCADKGASNITDVDIKCSTISM 258
I + VV+P+ +E S S ++L+V S+ + A NI D C I +
Sbjct: 196 IDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVMLEASAENILQQDF-CHAIKV 247
>AK027437-1|BAB55109.1| 504|Homo sapiens protein ( Homo sapiens
cDNA FLJ14531 fis, clone NT2RM2000371, weakly similar to
POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (EC 2.7.7.8).
).
Length = 504
Score = 32.7 bits (71), Expect = 1.4
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 146 GNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSDDPYDFKFLDVGSAPLLVTLCK 205
G +D L A+ P V A+ +G +V L LSD P++ VG+ + +
Sbjct: 145 GYFYDTQVLCNLLAVDGVNEPDVLAI--NGASVALSLSDIPWNGP---VGAVRIGI---- 195
Query: 206 IGEKCVVDPSAEEESCSVISLIVGITGNSKSYCADKGASNITDVDIKCSTISM 258
I + VV+P+ +E S S ++L+V S+ + A NI D C I +
Sbjct: 196 IDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVMLEASAENILQQDF-CHAIKV 247
>AJ458465-1|CAD30289.1| 783|Homo sapiens polynucleotide
phosphorylase-like protein protein.
Length = 783
Score = 32.7 bits (71), Expect = 1.4
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 146 GNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSDDPYDFKFLDVGSAPLLVTLCK 205
G +D L A+ P V A+ +G +V L LSD P++ VG+ + +
Sbjct: 145 GYFYDTQVLCNLLAVDGVNEPDVLAI--NGASVALSLSDIPWNGP---VGAVRIGI---- 195
Query: 206 IGEKCVVDPSAEEESCSVISLIVGITGNSKSYCADKGASNITDVDIKCSTISM 258
I + VV+P+ +E S S ++L+V S+ + A NI D C I +
Sbjct: 196 IDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVMLEASAENILQQDF-CHAIKV 247
>AC015982-3|AAY24271.1| 783|Homo sapiens unknown protein.
Length = 783
Score = 32.7 bits (71), Expect = 1.4
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 146 GNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSDDPYDFKFLDVGSAPLLVTLCK 205
G +D L A+ P V A+ +G +V L LSD P++ VG+ + +
Sbjct: 145 GYFYDTQVLCNLLAVDGVNEPDVLAI--NGASVALSLSDIPWNGP---VGAVRIGI---- 195
Query: 206 IGEKCVVDPSAEEESCSVISLIVGITGNSKSYCADKGASNITDVDIKCSTISM 258
I + VV+P+ +E S S ++L+V S+ + A NI D C I +
Sbjct: 196 IDGEYVVNPTRKEMSSSTLNLVVAGAPKSQIVMLEASAENILQQDF-CHAIKV 247
>D79992-1|BAA11487.2| 2090|Homo sapiens KIAA0170 protein.
Length = 2090
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 63 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGEN 100
++ + TPKP +P +E F + TPE +GG++
Sbjct: 1645 RSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQS 1682
>BX248307-2|CAM25929.1| 2089|Homo sapiens mediator of DNA damage
checkpoint 1 protein.
Length = 2089
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 63 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGEN 100
++ + TPKP +P +E F + TPE +GG++
Sbjct: 1644 RSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQS 1681
>BC131491-1|AAI31492.1| 778|Homo sapiens MDC1 protein protein.
Length = 778
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 63 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGEN 100
++ + TPKP +P +E F + TPE +GG++
Sbjct: 333 RSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQS 370
>BA000025-70|BAB63322.1| 2090|Homo sapiens KIAA0170 protein.
Length = 2090
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 63 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGEN 100
++ + TPKP +P +E F + TPE +GG++
Sbjct: 1645 RSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQS 1682
>AL845353-22|CAI41891.1| 2089|Homo sapiens mediator of DNA damage
checkpoint 1 protein.
Length = 2089
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 63 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGEN 100
++ + TPKP +P +E F + TPE +GG++
Sbjct: 1644 RSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQS 1681
>AL845353-21|CAI41890.1| 1244|Homo sapiens mediator of DNA damage
checkpoint 1 protein.
Length = 1244
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 63 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGEN 100
++ + TPKP +P +E F + TPE +GG++
Sbjct: 1034 RSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQS 1071
>AL662848-3|CAI17440.1| 2089|Homo sapiens mediator of DNA damage
checkpoint 1 protein.
Length = 2089
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 63 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGEN 100
++ + TPKP +P +E F + TPE +GG++
Sbjct: 1644 RSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQS 1681
>AL662797-7|CAI18195.1| 2089|Homo sapiens mediator of DNA damage
checkpoint 1 protein.
Length = 2089
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 63 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGEN 100
++ + TPKP +P +E F + TPE +GG++
Sbjct: 1644 RSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQS 1681
>AB103605-1|BAF31266.1| 2089|Homo sapiens KIAA0170 protein protein.
Length = 2089
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 63 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGEN 100
++ + TPKP +P +E F + TPE +GG++
Sbjct: 1644 RSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQS 1681
>AB088099-1|BAC54931.1| 2089|Homo sapiens homologue to Drosophila
photoreceptor protein calphotin protein.
Length = 2089
Score = 30.3 bits (65), Expect = 7.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 63 KTEIDTPKPDKPDMGKIEFFVDCSANATPEFEGRGGEN 100
++ + TPKP +P +E F + TPE +GG++
Sbjct: 1644 RSSVKTPKPVEPAASDLEPFTPTDQSVTPEAIAQGGQS 1681
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.317 0.135 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,643,385
Number of Sequences: 224733
Number of extensions: 1638821
Number of successful extensions: 5598
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 5568
Number of HSP's gapped (non-prelim): 39
length of query: 277
length of database: 73,234,838
effective HSP length: 89
effective length of query: 188
effective length of database: 53,233,601
effective search space: 10007916988
effective search space used: 10007916988
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)
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