Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002671-TA|BGIBMGA002671-PA|IPR001247|Exoribonuclease
(277 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92838-10|CAB07412.2| 312|Caenorhabditis elegans Hypothetical p... 136 2e-32
Z92832-9|CAB07377.2| 312|Caenorhabditis elegans Hypothetical pr... 136 2e-32
U00033-15|AAC48298.2| 434|Caenorhabditis elegans Hypothetical p... 81 9e-16
U39999-1|AAK93855.1| 277|Caenorhabditis elegans Hypothetical pr... 33 0.30
Z73422-8|CAA97771.3| 240|Caenorhabditis elegans Hypothetical pr... 31 1.2
AF016441-6|AAX55687.1| 440|Caenorhabditis elegans Paps (adenosi... 28 8.4
AF016441-5|AAX55688.1| 408|Caenorhabditis elegans Paps (adenosi... 28 8.4
AF016441-4|AAX55686.1| 425|Caenorhabditis elegans Paps (adenosi... 28 8.4
>Z92838-10|CAB07412.2| 312|Caenorhabditis elegans Hypothetical
protein F31D4.1 protein.
Length = 312
Score = 136 bits (328), Expect = 2e-32
Identities = 98/286 (34%), Positives = 151/286 (52%), Gaps = 28/286 (9%)
Query: 6 LSSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLA-NTDILVGIKT 64
LS EK+F++ G + + R+DGRS D+R + LE V+S +GS R++L TD+L GIK
Sbjct: 5 LSDDEKLFLITGAEANIRNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKL 64
Query: 65 EIDT--PKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFD-- 120
E+++ + +K I F VD SANA+ +F G+GG+ A +S Q AY S+A D
Sbjct: 65 ELESYDAETEKEPKQPINFNVDFSANASSQFAGKGGDEYAEELSAAFQAAY--SKALDIM 122
Query: 121 --LKQLCIVEGKQCWKLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNV 178
L + + +G + WK+ VDI +L+ G++ DA+S+A AL + P DGG V
Sbjct: 123 PNLAKTQLADGYR-WKINVDISVLQWDGSVSDAISIAIIGALSDLEFPEGDVAPDDGGKV 181
Query: 179 DLQLS---------DDPYDFKF--LDVGSAPLLVTLCKIGEKCVVDPSAEEESCSVISLI 227
+ L D+ LDV PLL+T+ KIG +VD + EEE C L+
Sbjct: 182 RIVLKRPKVAGNVRDENVQVAMWKLDVMRCPLLLTISKIGTANLVDCTPEEECCIRSQLL 241
Query: 228 VGITGNSKSYCADKGASNITDVDIKCSTISMNGPGSLAPKTLKNAI 273
VG+ AD +N + D+ C + G G L ++++ +
Sbjct: 242 VGLAA-----IADSSENNEPNYDVTC--VKQVGGGLLEMESIQEML 280
>Z92832-9|CAB07377.2| 312|Caenorhabditis elegans Hypothetical
protein F31D4.1 protein.
Length = 312
Score = 136 bits (328), Expect = 2e-32
Identities = 98/286 (34%), Positives = 151/286 (52%), Gaps = 28/286 (9%)
Query: 6 LSSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLA-NTDILVGIKT 64
LS EK+F++ G + + R+DGRS D+R + LE V+S +GS R++L TD+L GIK
Sbjct: 5 LSDDEKLFLITGAEANIRNDGRSCQDFRQIILERGVLSGTNGSCRVQLGQTTDVLAGIKL 64
Query: 65 EIDT--PKPDKPDMGKIEFFVDCSANATPEFEGRGGENLASSISNTMQRAYHSSQAFD-- 120
E+++ + +K I F VD SANA+ +F G+GG+ A +S Q AY S+A D
Sbjct: 65 ELESYDAETEKEPKQPINFNVDFSANASSQFAGKGGDEYAEELSAAFQAAY--SKALDIM 122
Query: 121 --LKQLCIVEGKQCWKLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNV 178
L + + +G + WK+ VDI +L+ G++ DA+S+A AL + P DGG V
Sbjct: 123 PNLAKTQLADGYR-WKINVDISVLQWDGSVSDAISIAIIGALSDLEFPEGDVAPDDGGKV 181
Query: 179 DLQLS---------DDPYDFKF--LDVGSAPLLVTLCKIGEKCVVDPSAEEESCSVISLI 227
+ L D+ LDV PLL+T+ KIG +VD + EEE C L+
Sbjct: 182 RIVLKRPKVAGNVRDENVQVAMWKLDVMRCPLLLTISKIGTANLVDCTPEEECCIRSQLL 241
Query: 228 VGITGNSKSYCADKGASNITDVDIKCSTISMNGPGSLAPKTLKNAI 273
VG+ AD +N + D+ C + G G L ++++ +
Sbjct: 242 VGLAA-----IADSSENNEPNYDVTC--VKQVGGGLLEMESIQEML 280
>U00033-15|AAC48298.2| 434|Caenorhabditis elegans Hypothetical
protein F37C12.13a protein.
Length = 434
Score = 81.0 bits (191), Expect = 9e-16
Identities = 68/245 (27%), Positives = 115/245 (46%), Gaps = 14/245 (5%)
Query: 6 LSSTEKVFIVHGVQEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTE 65
+++ EK I+ ++ R D RS ++R ++L VV G+A + NT ++ + E
Sbjct: 6 VTNCEKAVILEALKIGKRFDFRSLEEFRDVKL---VVGAEVGTAICTIGNTKVMAAVSAE 62
Query: 66 IDTPKPDKPDMGKIEFFVDCS--ANATPEFEGRGGENLASSISNTMQRAYHSSQAFDLKQ 123
I P +P G I VD S AN E + G + + + ++ S+ D++
Sbjct: 63 IAEPSSMRPHKGVINIDVDLSPMANYANEHDRLGSKGM--ELIRLLELIIRDSRCIDVEA 120
Query: 124 LCIVEGKQCWKLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLS 183
LCI GK+ WK+ VD+ IL+ G+L D LA AL + R P V L + +
Sbjct: 121 LCIRAGKEIWKIRVDVRILDEDGSLLDCACLAAITALQHFRRPNV-TLEPHHTLIYSEYE 179
Query: 184 DDPYDFKFLDVGSAPLLVT--LCKIGEKCVVDPSAEEESCSVISLIVGITGNSKSYCADK 241
P L++ P+ T L G+ V+DP+ +E +C S++V + CA
Sbjct: 180 KAPVP---LNIYHMPICTTIGLLDKGQIVVIDPTDKETACLDGSIVVA-CNKRREVCALH 235
Query: 242 GASNI 246
++N+
Sbjct: 236 QSTNL 240
>U39999-1|AAK93855.1| 277|Caenorhabditis elegans Hypothetical
protein F41G3.14 protein.
Length = 277
Score = 32.7 bits (71), Expect = 0.30
Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 133 WKLYVDILILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGNVDLQLSDDPYDFKFL 192
W+L++ + +L GN DA A AAL + ++P + +G ++ + D++ +
Sbjct: 126 WQLHIIVKVLSLEGNFLDAAVCALGAALVDAKLPSIVLNHSEGDESTIEKTQIQADYRTM 185
Query: 193 DVGSAPLLVTLCKIGEKCVVDPSAEEES 220
+ + C G VD +++++S
Sbjct: 186 HRLTLEEPLMCCSFG--IFVDVNSDKKS 211
>Z73422-8|CAA97771.3| 240|Caenorhabditis elegans Hypothetical
protein B0564.1a protein.
Length = 240
Score = 30.7 bits (66), Expect = 1.2
Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 18/155 (11%)
Query: 19 QEDFRSDGRSNIDYRPMELETDVVSHASGSARLRLANTDILVGIKTEIDTPKPDKPDMGK 78
+ FR DGR R + + +A GS L NT +L + + K K K
Sbjct: 6 EHGFRIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYE-GKSSKRIEDK 64
Query: 79 IEFFVDCSANATPEFEGRG---GENLASSISNTMQRAYHS---SQAFDLKQLCIVEGKQC 132
SA E + G+ ++ IS +++A+ S ++AF QL I C
Sbjct: 65 CAIVCQYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIF----C 120
Query: 133 WKLYVDILILECGGNLFDAVSLATKAALFNTRIPL 167
+ D G NL V+ AT AL + IP+
Sbjct: 121 EVIQGD------GSNLAACVN-ATSLALADAGIPM 148
>AF016441-6|AAX55687.1| 440|Caenorhabditis elegans Paps (adenosine
3'-phosphate 5'-phosphosulfate) transporter protein 1,
isoform b protein.
Length = 440
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 140 LILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGN 177
+IL G LFDA +L + ALF+T+ + K +M G N
Sbjct: 286 MILMAGYLLFDAFTLNWQKALFDTKPKVSKYQMMFGVN 323
>AF016441-5|AAX55688.1| 408|Caenorhabditis elegans Paps (adenosine
3'-phosphate 5'-phosphosulfate) transporter protein 1,
isoform c protein.
Length = 408
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 140 LILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGN 177
+IL G LFDA +L + ALF+T+ + K +M G N
Sbjct: 286 MILMAGYLLFDAFTLNWQKALFDTKPKVSKYQMMFGVN 323
>AF016441-4|AAX55686.1| 425|Caenorhabditis elegans Paps (adenosine
3'-phosphate 5'-phosphosulfate) transporter protein 1,
isoform a protein.
Length = 425
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 140 LILECGGNLFDAVSLATKAALFNTRIPLVKALLMDGGN 177
+IL G LFDA +L + ALF+T+ + K +M G N
Sbjct: 271 MILMAGYLLFDAFTLNWQKALFDTKPKVSKYQMMFGVN 308
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.135 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,034,669
Number of Sequences: 27539
Number of extensions: 298109
Number of successful extensions: 623
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 8
length of query: 277
length of database: 12,573,161
effective HSP length: 80
effective length of query: 197
effective length of database: 10,370,041
effective search space: 2042898077
effective search space used: 2042898077
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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