GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002670-TA|BGIBMGA002670-PA|IPR000734|Lipase,
IPR013818|Lipase, N-terminal
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    30   0.40 
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    29   1.2  
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom...    27   2.8  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.9  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   6.5  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    26   8.6  

>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 42   GEGVPHLVDLEEPAEEDILMSRNGANNQYWLFTRRNQNNHQVITNGNVNSIRNSNYNG-N 100
            G+ V H + L E   +D++++   A N      R++Q +   + +   +S+R+    G N
Sbjct: 2174 GDWVRHFITLFEDKSQDVVVAAVAAQNTLVSALRKDQLDS--LVSIAYHSLRDVGSQGVN 2231

Query: 101  LPLFVIVHGWNS 112
            LP F +  G NS
Sbjct: 2232 LPAFEVAQGVNS 2243


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 31  EGVSRYVWMPDGEGVPHLVDLEEPAEEDILMSRNGANNQYWLFTRRNQNNHQVITNGNVN 90
           EG+ R +    GE +P  V L+      I M    A N   L  R+ +    +IT G  N
Sbjct: 48  EGIRRVLCYASGEEIPRKVPLDLTRVSSIRMGTTVATNA--LLERKGEKTAFIITEGFRN 105

Query: 91  SIRNSN 96
            +   N
Sbjct: 106 LVEIGN 111


>SPBC21C3.07c |||actin binding methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 281

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 46  PHLVDL--EEPAEEDILMSRNGANNQYWLFTRRNQNNH 81
           P L+DL  E+  E+ IL    GA N  W   + N+N++
Sbjct: 106 PELLDLLKEDAGEKSILEIGCGAGNTIWPILKENKNSN 143


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 44/173 (25%), Positives = 59/173 (34%), Gaps = 10/173 (5%)

Query: 52  EEPAEEDILMSRNGANNQYWLFTRRNQNNHQVITNG--NVNSIRNSNYNGNLPLFVIV-- 107
           E P E   L    GA +        N N     TN   N N+  N+N N           
Sbjct: 40  EPPVENLKLAPPPGATSVNTAVYNNNNNTSAANTNAAYNANTAANANANTATTTNAAATT 99

Query: 108 -HGWNSNGNSAVNTMIRPALLAVSDCNVIVVDWRGLANGLYNTAVNGVPSVGQFLGNFLV 166
              +N N  +  N    P   A +  N    D +GL +GL  T+ NG  +   +     V
Sbjct: 100 SAAYNPNAPANTNAAYYPNAAATTTTNADGSD-KGLFSGL--TSSNGYTTGNSYSRPSYV 156

Query: 167 WLINNGGGNWGRVHLIGFSLG--AHVVGNAGRQAGGRPNRVTGLDPAGPRWGG 217
             +  G G      L   +LG   H  G+ G   GG      G  P    +GG
Sbjct: 157 APVAAGLGGLALGGLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGG 209


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 71  WLFTRRNQNNHQVITNGNVNS--IRNSNYNGNLPLFVIVHGWNSNGNSAVNTMIRPALLA 128
           W+FT  ++N  QV  NG + S     +N   + PL    +G  S+G+     + +  LL 
Sbjct: 425 WVFTSDDRNLAQVWVNGRLVSGFEMKANLKNSTPL---TNGVTSSGHQVFKELTQAHLLP 481

Query: 129 VSDC 132
            + C
Sbjct: 482 RTQC 485


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 27  SHYVEGVSRYVWMPDGEGVPHLVDLEEPAEEDILMSR 63
           S Y +G+S  V +  G+GV H+V + E    + L+ R
Sbjct: 141 SLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGR 177


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.139    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,560,179
Number of Sequences: 5004
Number of extensions: 68364
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 6
length of query: 332
length of database: 2,362,478
effective HSP length: 73
effective length of query: 259
effective length of database: 1,997,186
effective search space: 517271174
effective search space used: 517271174
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)