GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002669-TA|BGIBMGA002669-PA|IPR000734|Lipase,
IPR013818|Lipase, N-terminal
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    28   3.4  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    28   4.5  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   5.9  

>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 228 YAYVFYAESIRQAVDGGNEFVGTACNSYEEARNLRCSGPRDAIFGG 273
           YAY+ + + +  ++DG + F  +   SY+       S P  A FGG
Sbjct: 187 YAYLNFPQLVSLSIDGDDSFHPSLIESYQVGGYDGVSIPTPATFGG 232


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/14 (71%), Positives = 11/14 (78%)

Query: 595 NGGTLHMGNGNFGK 608
           NGG +H G GNFGK
Sbjct: 706 NGGLIHQGVGNFGK 719


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 315 PGDNSHYVEGESRYIWMPDGEGVPQLVDLHEPIDYE 350
           P D S YV    R++  P G+   Q +D   P+ +E
Sbjct: 163 PMDKSRYVNANYRFVVSPIGDYQSQKLDPDSPVKWE 198


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.137    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,402
Number of Sequences: 5004
Number of extensions: 123918
Number of successful extensions: 228
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 4
length of query: 624
length of database: 2,362,478
effective HSP length: 77
effective length of query: 547
effective length of database: 1,977,170
effective search space: 1081511990
effective search space used: 1081511990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)