GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002669-TA|BGIBMGA002669-PA|IPR000734|Lipase,
IPR013818|Lipase, N-terminal
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0618 - 21262021-21262117,21262429-21262466,21262933-212629...    33   0.52 
01_01_1143 - 9064210-9065682                                           33   0.52 
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631...    33   0.90 
11_01_0259 + 1981554-1982249                                           31   3.6  
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646...    29   8.4  
05_07_0228 - 28526885-28527046,28527151-28527241,28528315-285284...    29   8.4  

>12_02_0618 -
           21262021-21262117,21262429-21262466,21262933-21262986,
           21263274-21263438,21263523-21263759,21263857-21263918,
           21264543-21264656,21264816-21264942,21266200-21266218,
           21266338-21266428,21266932-21267094,21267182-21267330,
           21268147-21268287,21268368-21268533,21268568-21268631,
           21268729-21269084,21269759-21269977,21270328-21270433,
           21270713-21270942
          Length = 865

 Score = 33.5 bits (73), Expect = 0.52
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 4/128 (3%)

Query: 488 RQAGGRPARVTGLDPAGPQWGGNSNALNRNAGHYVECIHTDGRALGIFNPSGDA-DFYPN 546
           RQA G+    TG+     ++   +N+L+         I      L +   SGD  +F+P 
Sbjct: 518 RQAMGQFEHFTGMPVVDCKFRALANSLDNPDAMKAAGITAHKARLWLHERSGDLIEFHPR 577

Query: 547 GGRNPQPGCRINTCSHGRATELMASSVRTNHLVGRRCGNI-WEAELSNCNGGTLHMGNGN 605
            GR  QPG        G +   +A++    H +    G++ + +       G+  +G  N
Sbjct: 578 SGRGMQPGHGGALYHFGTSGAAVAAATAVTHPLA--LGSVRYSSSSVGLGNGSKEIGLQN 635

Query: 606 FGKRGSGL 613
           +G   SGL
Sbjct: 636 WGADDSGL 643


>01_01_1143 - 9064210-9065682
          Length = 490

 Score = 33.5 bits (73), Expect = 0.52
 Identities = 20/66 (30%), Positives = 30/66 (45%)

Query: 444 AGVPDVGRALGNFLVWLINNAGGNWNQVHLIGFSLGAHVVGNAGRQAGGRPARVTGLDPA 503
           AG P V  ALG  L  ++ + GG     +++G       + N G  AG   + + G+  A
Sbjct: 403 AGGPGVNPALGQALTAILASQGGGLGLNNILGVGANGSGLPNPGASAGLGSSGLPGMPGA 462

Query: 504 GPQWGG 509
           G   GG
Sbjct: 463 GGYLGG 468


>12_02_0522 - 19960092-19960595,19962737-19962880,19963042-19963131,
            19963215-19963320,19963400-19963574,19963849-19963951,
            19964382-19964636,19964726-19964803,19964908-19965000,
            19965091-19965222,19965898-19966002,19966127-19966201,
            19966284-19966340,19966419-19966532,19966613-19966756,
            19966886-19966969,19967071-19967164,19967244-19967369,
            19967507-19967580,19967672-19967875,19968234-19968388,
            19968860-19968947,19969505-19969730,19970235-19970286,
            19970766-19970958,19973221-19973314,19973744-19973788,
            19974874-19974896
          Length = 1210

 Score = 32.7 bits (71), Expect = 0.90
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 463  NAGGNWNQVHLIGFSLGAHVVGNAGRQAGGRPARVTGLDPAGPQWGGNSNALNRNAGHYV 522
            + GG W+++ L   + G    G   R+A GR  R  GL      WGG +       G   
Sbjct: 1140 SGGGAWDELEL-ELADGVRRGGKERRRAAGRRRRALGLGSGIGHWGGGAERWCWGGGDEE 1198

Query: 523  ECIHTDGRALG 533
               H  GR  G
Sbjct: 1199 LSRHHQGRGKG 1209


>11_01_0259 + 1981554-1982249
          Length = 231

 Score = 30.7 bits (66), Expect = 3.6
 Identities = 17/44 (38%), Positives = 23/44 (52%)

Query: 211 SGGSGQSGCLDDACSHSYAYVFYAESIRQAVDGGNEFVGTACNS 254
           SG S +SG LDD  +  ++ V   + I QA D GN    T  +S
Sbjct: 80  SGNSDRSGGLDDQATSGFSIVDLLDGILQADDDGNGGGATPASS 123


>10_08_0973 -
           21963754-21963936,21964089-21964383,21964504-21964616,
           21964729-21964913,21965054-21965201,21965297-21965575,
           21965657-21965761,21965936-21966178,21966426-21966486,
           21966734-21966792
          Length = 556

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 548 GRNPQPGCRINTCSHGRATELMASSVRTNHL 578
           G++ +PGC +NTC+H RA  L   SV    +
Sbjct: 264 GKDGRPGCVMNTCAH-RACPLHLGSVNEGRI 293


>05_07_0228 -
           28526885-28527046,28527151-28527241,28528315-28528455,
           28528560-28528625,28529180-28529317,28529759-28529860,
           28530156-28530236,28530314-28530383,28530598-28530674,
           28531035-28531483
          Length = 458

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 434 LANSNYNTAAAGVPDVGRALGNFLVWLINNAGGNWNQVHLIGFSLGAHVVGNAGRQAGGR 493
           + N    T +  V D    + +F+   +   GG+ NQ++L+G S GAH+   A  +   +
Sbjct: 225 IGNFPQGTISDMVSDASDGI-SFVCETVGAYGGDPNQIYLMGQSAGAHIAACALLEQAAK 283

Query: 494 PAR 496
            +R
Sbjct: 284 ESR 286


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.137    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,175,361
Number of Sequences: 37544
Number of extensions: 950928
Number of successful extensions: 1880
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1877
Number of HSP's gapped (non-prelim): 7
length of query: 624
length of database: 14,793,348
effective HSP length: 86
effective length of query: 538
effective length of database: 11,564,564
effective search space: 6221735432
effective search space used: 6221735432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)