GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002668-TA|BGIBMGA002668-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site
         (207 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.0  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   2.3  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   9.3  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 153 NIVQTLEDGIAFLDTFLNPNKGNS 176
           ++V +L+D I  +D  LNP+ G S
Sbjct: 365 DVVDSLKDVIEIVDKLLNPDLGLS 388


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 38  MVKISYGKNLIHSSKIQGSNPEPICLQVFDKLAEVC 73
           + K  Y K ++   K +    + IC++  DKL +VC
Sbjct: 493 LYKNKYRKLIVDGKKSEEQIVD-ICIRSHDKLCDVC 527


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 171 PNKGNSTPTAASSTVKPDNS 190
           P + +  PT +S+T KP  +
Sbjct: 411 PTQASEQPTESSTTQKPQTT 430


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,472
Number of Sequences: 317
Number of extensions: 1632
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 207
length of database: 114,650
effective HSP length: 54
effective length of query: 153
effective length of database: 97,532
effective search space: 14922396
effective search space used: 14922396
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)