GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002668-TA|BGIBMGA002668-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site
         (207 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    29   0.65 
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    27   2.6  
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...    25   8.0  

>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 149 SVYQNIVQTLEDGIAFLDTFLNPNKGNSTPTAASSTVKPDNSAESQNRQSKYFKH 203
           S YQNI+ +L++  A LD    PN+ +S+  ++  +     +A S +    + KH
Sbjct: 272 STYQNILNSLDNNPAVLDLNGPPNQESSSSASSYGSRTQTPNARSCSLNIVFHKH 326


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 4/41 (9%)

Query: 50  SSKIQGSNPEP---ICLQVFDKLAEVCAKFSE-LAPTSEGI 86
           S  +QG +  P   + +Q+FD++ E+CA  +E + P  +GI
Sbjct: 462 SLSVQGVDELPFKMLFMQLFDRILEICAAMTEDVRPPYKGI 502


>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 47  LIHSSKIQGSNPEPICLQVFDKLAEVCAK---FSELAPTSEGIRGCLELEPRIFLVPQIQ 103
           L  S  +   +P+ IC Q+ D + + C K   FS++A  +    G + +   I    QI 
Sbjct: 6   LFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGMVMVFGEITTRSQID 65

Query: 104 F 104
           +
Sbjct: 66  Y 66


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 852,727
Number of Sequences: 5004
Number of extensions: 31544
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 3
length of query: 207
length of database: 2,362,478
effective HSP length: 70
effective length of query: 137
effective length of database: 2,012,198
effective search space: 275671126
effective search space used: 275671126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)