GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002668-TA|BGIBMGA002668-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site
         (207 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0757 + 31539660-31540859                                         29   2.7  
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488...    29   3.6  
03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,547...    29   3.6  
01_06_0543 + 30110477-30110612,30110935-30111064,30111173-30111803     28   4.7  
02_01_0517 + 3733921-3735012                                           28   6.2  

>02_05_0757 + 31539660-31540859
          Length = 399

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 27  HMKYVS-PDEGFMVKISYGKNLIHSSKIQGSNPEPICLQVFDKLAEVCAKFSELAPTSEG 85
           H+K  S PD        +G +    + I  SNP  +C ++   LA +C++   +  +   
Sbjct: 84  HLKSRSNPDAVLAFLADFGLSPKEVAAIVASNPRILCARIDRSLAPICSELRAVGLSPSQ 143

Query: 86  IRGCLELEPRIFL----VPQIQFPIGCFKST 112
           I    ++  R FL    V +++F +  F S+
Sbjct: 144 IARLAQITGRYFLCRSFVSKVRFWLPLFGSS 174


>03_05_0890 -
           28547462-28547545,28548451-28548528,28548641-28548814,
           28548902-28548958,28549065-28549116,28549907-28549995,
           28550259-28550344,28550427-28550637,28551790-28551882,
           28551958-28552098,28552175-28552267,28553879-28554113,
           28554263-28554435,28555234-28556571,28556668-28556853,
           28557625-28557713,28557756-28557905,28557951-28558596
          Length = 1324

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 170 NPNKGNSTPTAASSTVKPDNSAESQNRQSKYFKHPNQ 206
           +PNK   TP A SS  + ++  ES + QS   KH ++
Sbjct: 577 SPNKKTDTPPAVSSQAELNSPVESTSHQSLPPKHQHK 613


>03_02_0078 +
           5476288-5476626,5477474-5477670,5477750-5477885,
           5478055-5478132,5478227-5478280,5478466-5478650,
           5478781-5480374,5480506-5480700,5480753-5480904,
           5481213-5481486,5481597-5481733,5482219-5482258,
           5482773-5483261,5483605-5484168
          Length = 1477

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)

Query: 169 LNPNKGNSTPTAASSTVKPDNS 190
           +NP    S PT++SS++KP+NS
Sbjct: 351 INPAVFKSNPTSSSSSIKPNNS 372


>01_06_0543 + 30110477-30110612,30110935-30111064,30111173-30111803
          Length = 298

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 151 YQNIVQTLEDGIAFLDTFLNPNKGNSTPTAASSTVKPDNSAESQN 195
           Y  I     D      ++ +P+ G ++PTA+SST   D S+ S N
Sbjct: 196 YSTITAAAVDAATTTTSWSSPSTGTTSPTASSST---DGSSSSSN 237


>02_01_0517 + 3733921-3735012
          Length = 363

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 171 PNKGNSTPTAASSTVKPDNSAESQNRQSKYFKH 203
           PN+ ++TP A +S+ K   +  +QN+   ++K+
Sbjct: 200 PNESSATPEANASSFKKGENQNNQNKGKNFWKN 232


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,190,945
Number of Sequences: 37544
Number of extensions: 185943
Number of successful extensions: 401
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 5
length of query: 207
length of database: 14,793,348
effective HSP length: 79
effective length of query: 128
effective length of database: 11,827,372
effective search space: 1513903616
effective search space used: 1513903616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)