GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002668-TA|BGIBMGA002668-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site
         (207 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical ...    36   0.016
M32877-1|AAA28001.1|  669|Caenorhabditis elegans daf-1 protein.        27   9.7  
AF067616-10|AAC19189.2|  668|Caenorhabditis elegans Abnormal dau...    27   9.7  
AF067616-9|AAP82657.1|  669|Caenorhabditis elegans Abnormal daue...    27   9.7  

>AF002196-7|AAB53977.1|  254|Caenorhabditis elegans Hypothetical
           protein C09D4.2 protein.
          Length = 254

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 7/92 (7%)

Query: 25  CVHMKYVSPDEGFMVKISYGKNLIHSSKIQGSNPEPICLQV----FDKLAEVCAKFS--E 78
           CV+  Y     G  + I    +   S +I   NP P+C  +     + +A VC  F+  +
Sbjct: 161 CVNATYNPVSIGLDLSIGVDGHYF-SEEISLRNPPPVCFSLPIPGAEHIAGVCVAFTKLD 219

Query: 79  LAPTSEGIRGCLELEPRIFLVPQIQFPIGCFK 110
           L    + + GC++ E  +  +  + F +GCF+
Sbjct: 220 LDKKEKILSGCMDFEVELIHLRVLTFKLGCFR 251


>M32877-1|AAA28001.1|  669|Caenorhabditis elegans daf-1 protein.
          Length = 669

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 151 YQNIVQTLEDGIAFLDTFLNPNKGNSTPTAASSTVKPDN 189
           Y N++++   G+AFL   +  +K ++ P  A   +K  N
Sbjct: 390 YYNLMRSTASGLAFLHNQIGGSKESNKPAMAHRDIKSKN 428


>AF067616-10|AAC19189.2|  668|Caenorhabditis elegans Abnormal dauer
           formation protein1, isoform b protein.
          Length = 668

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 151 YQNIVQTLEDGIAFLDTFLNPNKGNSTPTAASSTVKPDN 189
           Y N++++   G+AFL   +  +K ++ P  A   +K  N
Sbjct: 390 YYNLMRSTASGLAFLHNQIGGSKESNKPAMAHRDIKSKN 428


>AF067616-9|AAP82657.1|  669|Caenorhabditis elegans Abnormal dauer
           formation protein1, isoform a protein.
          Length = 669

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 151 YQNIVQTLEDGIAFLDTFLNPNKGNSTPTAASSTVKPDN 189
           Y N++++   G+AFL   +  +K ++ P  A   +K  N
Sbjct: 390 YYNLMRSTASGLAFLHNQIGGSKESNKPAMAHRDIKSKN 428


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,584,741
Number of Sequences: 27539
Number of extensions: 170967
Number of successful extensions: 415
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 412
Number of HSP's gapped (non-prelim): 4
length of query: 207
length of database: 12,573,161
effective HSP length: 78
effective length of query: 129
effective length of database: 10,425,119
effective search space: 1344840351
effective search space used: 1344840351
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)