GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002667-TA|BGIBMGA002667-PA|undefined
         (145 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    26   2.0  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    26   2.0  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    26   2.0  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    25   3.5  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    25   4.6  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    25   4.6  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   6.1  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    24   8.0  

>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 36  AEDTPSPSTAKVLAKRSSSAAFMEFKNKQQ 65
           A D+P+   A+  A  SSS     F+N+QQ
Sbjct: 261 ANDSPTRQNARATAIASSSNTAASFRNRQQ 290


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 10  RRRRSSATSN-IQLNLDVGYQVSEGQPAEDTPSPSTAK 46
           R  + +ATS  + L+ D  YQ SE   +E +P  ST+K
Sbjct: 146 RALKDTATSRPLALSSDTSYQKSEKAKSEKSPFLSTSK 183


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 14/51 (27%), Positives = 25/51 (49%)

Query: 13  RSSATSNIQLNLDVGYQVSEGQPAEDTPSPSTAKVLAKRSSSAAFMEFKNK 63
           R  +T +  L++D+G  V    P E    P TA++   +S +  ++  K K
Sbjct: 186 RYLSTLDCFLSIDIGGMVEYWSPEEPFQKPDTAELFNMKSQTDLYIFKKQK 236


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 34  QPAEDTPSPSTAKVLAKRSSSAAFMEFKN 62
           +  EDTPSPST++  +K       ++++N
Sbjct: 109 EEVEDTPSPSTSQNASKDEEKEVKIDWQN 137


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 29  QVSEGQPAEDTPSPSTAKVLAKRSSSAAFME 59
           Q SE +  E+TP  +  + L +++S+A+F +
Sbjct: 78  QTSEKKETEETPKENPLEKLKQKASTASFYD 108


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 8/51 (15%)

Query: 13  RSSATSNIQLNLDVGYQVSEGQPAEDTPSPSTAKVLAKRSSSAAFMEFKNK 63
           ++ AT+N+Q      Y+  + Q  +D  + + A    KRS +AAF E +NK
Sbjct: 111 QAKATNNMQ-----AYEQRQKQLMDDVEAKAAA---VKRSPAAAFDEMRNK 153


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 4    EPECQLRRRRSSATSNIQLNLDVGYQVSEGQPAEDTPSPSTAKVLAKRSSSAAFMEFKNK 63
            +P+ Q   RR S   N++          + + A  TPSP+ ++   K SS    +E  ++
Sbjct: 1220 QPKKQTANRRQSGKPNVK-------SAQKIESATRTPSPAISESRKKPSSKDTKIETPSR 1272

Query: 64   QQS 66
            +QS
Sbjct: 1273 EQS 1275


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 6   ECQLRRRRSSATSNIQLNLDVGYQVS 31
           E Q     S +T N+Q+N DV YQ +
Sbjct: 231 ETQTMPSLSPSTENLQINNDVTYQAA 256


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.307    0.123    0.334 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 523,330
Number of Sequences: 5004
Number of extensions: 16105
Number of successful extensions: 34
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 8
length of query: 145
length of database: 2,362,478
effective HSP length: 67
effective length of query: 78
effective length of database: 2,027,210
effective search space: 158122380
effective search space used: 158122380
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 50 (24.2 bits)