GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002667-TA|BGIBMGA002667-PA|undefined
         (145 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0930 - 7181514-7181756,7181847-7181903,7182656-7182859,718...    28   3.4  
06_03_0908 - 25858909-25859185,25859765-25859892,25860061-258607...    27   4.5  
02_01_0627 + 4708648-4708836,4708975-4709064,4709579-4709664,471...    27   4.5  
06_03_0334 - 19660526-19661755                                         27   7.8  
03_02_0710 + 10587969-10588069,10588181-10588262,10588362-105884...    27   7.8  

>06_01_0930 -
          7181514-7181756,7181847-7181903,7182656-7182859,
          7182937-7183266
          Length = 277

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 34 QPAEDTPSPSTAKVLAKRSSSAAFMEFKNKQQSF 67
          +P  D PSPS A+ LA R +  AF  F ++   F
Sbjct: 14 EPYHDHPSPSPAQCLAVRDALLAFHGFPDEFAPF 47


>06_03_0908 -
           25858909-25859185,25859765-25859892,25860061-25860765,
           25860882-25860944,25861031-25861084,25861338-25861514,
           25861644-25861813,25862011-25862065,25862220-25862918,
           25863110-25863173,25863515-25863723,25866138-25866227,
           25866390-25866617
          Length = 972

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 3   EEPECQLRRRRSSATSNIQLNLDVGYQVSEGQPAEDTPSPSTA 45
           EE    L+RR  +    ++   D+   + EG+  ED   PS A
Sbjct: 110 EEANRLLKRRLETERPRVETTSDMSEDLFEGEKGEDAGDPSVA 152


>02_01_0627 +
           4708648-4708836,4708975-4709064,4709579-4709664,
           4710108-4710332,4711251-4711314,4711793-4712491,
           4712657-4712764,4712920-4713051,4713183-4713359,
           4713920-4713973,4714072-4714134,4714227-4714928,
           4715048-4715175,4715563-4715839
          Length = 997

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 3   EEPECQLRRRRSSATS-NIQLNLDVGYQVSEGQPAEDTPSPSTA 45
           +E  C+L +R+  A       N D+   + EG+  ED   PS A
Sbjct: 130 KEEACRLLKRQPEAEKLRTDTNADMSEDLFEGEKGEDAGDPSVA 173


>06_03_0334 - 19660526-19661755
          Length = 409

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 123 RVKTTEGDCYTDVSDADTEEEEE 145
           R K +E   YT  S+ DTEEE E
Sbjct: 295 RSKISESGAYTSSSNQDTEEETE 317


>03_02_0710 +
           10587969-10588069,10588181-10588262,10588362-10588414,
           10588828-10589315,10589415-10589575,10589699-10589896,
           10590091-10590277,10590355-10590611
          Length = 508

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 89  NTVSGINRSLTPVPIQDFAANVVYTEGPQATDFLRVKTTEGDCYTDVSDADTEEE 143
           N V G N+    + + D  +N   T GP ++  + +   +GD   D     TE+E
Sbjct: 107 NRVEGENKQPLRIVLTDAVSNQTITSGPLSSMKVELLVLDGDFNADERLEYTEKE 161


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.307    0.123    0.334 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,296,284
Number of Sequences: 37544
Number of extensions: 102077
Number of successful extensions: 255
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 5
length of query: 145
length of database: 14,793,348
effective HSP length: 76
effective length of query: 69
effective length of database: 11,940,004
effective search space: 823860276
effective search space used: 823860276
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 56 (26.6 bits)