GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002667-TA|BGIBMGA002667-PA|undefined
         (145 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013130-1|AAY67799.1| 2014|Homo sapiens leucine-rich repeat kin...    29   8.0  
BC066655-1|AAH66655.1|  439|Homo sapiens LRRK1 protein protein.        29   8.0  
BC005408-1|AAH05408.2|  659|Homo sapiens LRRK1 protein protein.        29   8.0  
AK131075-1|BAC85125.1| 1112|Homo sapiens FLJ00262 protein protein.     29   8.0  
AK026772-1|BAB15547.1|  253|Homo sapiens protein ( Homo sapiens ...    29   8.0  
AC007785-1|AAD38244.1|  477|Homo sapiens BC282485_1 protein.           29   8.0  
AB058693-1|BAB47419.1| 1369|Homo sapiens KIAA1790 protein protein.     29   8.0  

>DQ013130-1|AAY67799.1| 2014|Homo sapiens leucine-rich repeat kinase 1
            protein.
          Length = 2014

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 100  PVPIQD-FAANVVYTEGPQATDFLRVKTTEGDCYTDVSDADTEE 142
            P P++D F    + TE P A+     K  EGD   DVS   +EE
Sbjct: 1779 PSPLRDMFPVRPLDTEPPAASHTANPKVPEGDSIADVSIMYSEE 1822


>BC066655-1|AAH66655.1|  439|Homo sapiens LRRK1 protein protein.
          Length = 439

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 100 PVPIQD-FAANVVYTEGPQATDFLRVKTTEGDCYTDVSDADTEE 142
           P P++D F    + TE P A+     K  EGD   DVS   +EE
Sbjct: 204 PSPLRDMFPVRPLDTEPPAASHTANPKVPEGDSIADVSIMYSEE 247


>BC005408-1|AAH05408.2|  659|Homo sapiens LRRK1 protein protein.
          Length = 659

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 100 PVPIQD-FAANVVYTEGPQATDFLRVKTTEGDCYTDVSDADTEE 142
           P P++D F    + TE P A+     K  EGD   DVS   +EE
Sbjct: 456 PSPLRDMFPVRPLDTEPPAASHTANPKVPEGDSIADVSIMYSEE 499


>AK131075-1|BAC85125.1| 1112|Homo sapiens FLJ00262 protein protein.
          Length = 1112

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 100 PVPIQD-FAANVVYTEGPQATDFLRVKTTEGDCYTDVSDADTEE 142
           P P++D F    + TE P A+     K  EGD   DVS   +EE
Sbjct: 877 PSPLRDMFPVRPLDTEPPAASHTANPKVPEGDSIADVSIMYSEE 920


>AK026772-1|BAB15547.1|  253|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ23119 fis, clone LNG07978. ).
          Length = 253

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 100 PVPIQD-FAANVVYTEGPQATDFLRVKTTEGDCYTDVSDADTEE 142
           P P++D F    + TE P A+     K  EGD   DVS   +EE
Sbjct: 18  PSPLRDMFPVRPLDTEPPAASHTANPKVPEGDSIADVSIMYSEE 61


>AC007785-1|AAD38244.1|  477|Homo sapiens BC282485_1 protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 6   ECQLRRRRSSATSNIQLNLDVGY-QVSEGQPAEDTPSPSTAKVLAKRSSSAAFMEFKNKQ 64
           E  LR R  + TS + L    G      G+PA  +PSP+  + L  R    AF++ K ++
Sbjct: 265 ERSLRARLKTLTSELALYKRGGRGSRGRGRPARPSPSPTGGRAL--RFDPTAFVKAKERK 322

Query: 65  Q 65
           Q
Sbjct: 323 Q 323


>AB058693-1|BAB47419.1| 1369|Homo sapiens KIAA1790 protein protein.
          Length = 1369

 Score = 28.7 bits (61), Expect = 8.0
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 100  PVPIQD-FAANVVYTEGPQATDFLRVKTTEGDCYTDVSDADTEE 142
            P P++D F    + TE P A+     K  EGD   DVS   +EE
Sbjct: 1134 PSPLRDMFPVRPLDTEPPAASHTANPKVPEGDSIADVSIMYSEE 1177


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.307    0.123    0.334 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,778,276
Number of Sequences: 224733
Number of extensions: 500899
Number of successful extensions: 1009
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1009
Number of HSP's gapped (non-prelim): 7
length of query: 145
length of database: 73,234,838
effective HSP length: 83
effective length of query: 62
effective length of database: 54,581,999
effective search space: 3384083938
effective search space used: 3384083938
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 61 (28.7 bits)