GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002667-TA|BGIBMGA002667-PA|undefined
         (145 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66497-7|CAE17887.1|  197|Caenorhabditis elegans Hypothetical pr...    30   0.57 
U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical pr...    29   0.99 
U23515-2|AAK21459.1|  200|Caenorhabditis elegans Hypothetical pr...    26   9.2  
U23172-16|AAC46524.1|  757|Caenorhabditis elegans Hypothetical p...    26   9.2  
AF036700-1|AAB88364.1|  258|Caenorhabditis elegans Hypothetical ...    26   9.2  

>Z66497-7|CAE17887.1|  197|Caenorhabditis elegans Hypothetical
           protein K08F8.7 protein.
          Length = 197

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 19  NIQLNLDVGYQVSEGQPAEDTPSPSTAKVLAKRSSSAAFMEFKNKQQS 66
           ++ LN    Y+ S+  P  D P PS A +  ++S    +ME++ K Q+
Sbjct: 147 DLGLNAFYFYRNSKKAPIYDIPPPSVAVIETEKSIHDIYMEYQRKGQT 194


>U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical
           protein F59A6.3 protein.
          Length = 786

 Score = 29.5 bits (63), Expect = 0.99
 Identities = 27/118 (22%), Positives = 39/118 (33%), Gaps = 4/118 (3%)

Query: 14  SSATSNIQLNLDVGYQVSEGQPAEDTPSPSTAKVLAKRSSS--AAFMEFKNKQQSFXXXX 71
           +S TS    +  +G   S G     TP PST   +++ ++S      E      S     
Sbjct: 373 ASTTSGSLFSTSLGSSQSPGSSVSTTPGPSTISGISQSTTSGPTTTSEPSTTSGSTVSDT 432

Query: 72  XXXXXXXXXXXXXXXXXNTVSGINRSLTPVPIQDFAANVVYTEGPQATDFLRVKTTEG 129
                            +T SG   S TP       ++   T GP  +    V TT G
Sbjct: 433 SGPSTTSGPSTTLGTTQSTTSG--PSTTPGSTISTTSSASTTSGPSTSSGSTVSTTSG 488


>U23515-2|AAK21459.1|  200|Caenorhabditis elegans Hypothetical
           protein R144.10 protein.
          Length = 200

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 94  INRSLTPVPIQDFAANVVYTE 114
           +++SL PVP + F AN+V+ E
Sbjct: 11  LSKSLAPVPHEIFIANIVHDE 31


>U23172-16|AAC46524.1|  757|Caenorhabditis elegans Hypothetical
           protein F25B5.2 protein.
          Length = 757

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 1   MTEEPECQLRRRRSSATSNIQLNLD 25
           M E+P+  L+    S +SN  +NLD
Sbjct: 608 MPEQPQASLKSLNDSVSSNADINLD 632


>AF036700-1|AAB88364.1|  258|Caenorhabditis elegans Hypothetical
           protein M04G7.1 protein.
          Length = 258

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 17/53 (32%), Positives = 22/53 (41%)

Query: 5   PECQLRRRRSSATSNIQLNLDVGYQVSEGQPAEDTPSPSTAKVLAKRSSSAAF 57
           P+C  R    SATS       VG     G  +  TP P+   VL+  S+   F
Sbjct: 202 PDCTTRGNYCSATSVSAYQKRVGCGNQCGLCSPTTPQPAAPAVLSTNSNGFLF 254


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.307    0.123    0.334 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,649
Number of Sequences: 27539
Number of extensions: 91963
Number of successful extensions: 219
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 5
length of query: 145
length of database: 12,573,161
effective HSP length: 75
effective length of query: 70
effective length of database: 10,507,736
effective search space: 735541520
effective search space used: 735541520
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 55 (26.2 bits)