GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002666-TA|BGIBMGA002666-PA|IPR006625|Insect
pheromone/odorant binding protein PhBP, IPR006170|Pheromone/general
odorant binding protein, PBP/GOBP
         (127 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    29   0.23 
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...    25   2.8  
SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe...    25   2.8  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    25   2.8  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   2.8  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    25   3.7  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    25   4.8  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    25   4.8  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    24   8.5  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    24   8.5  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    24   8.5  

>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 29.1 bits (62), Expect = 0.23
 Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 22  KQYTSECVRESGVSTEAINAAKIGKYSKD---KAFKNFVLCFFKKSAIFNSDGTLNMDVA 78
           K  TS        ST  INA+   KYS D   + FK      F K+  F S  T +    
Sbjct: 55  KARTSATFDVRSASTSPINASDFHKYSHDPFQRLFKAKGNASFSKTKSFPSSVTYSPSEE 114

Query: 79  LAKLPPGVNKS 89
              L  G+NKS
Sbjct: 115 TFPLTSGMNKS 125


>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 13  LAETQKEKAKQYTSECVRESGV 34
           + E  K KA  YT+ C RE GV
Sbjct: 111 ILEAMKNKADYYTNICDRERGV 132


>SPAC869.09 |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 10 NVHLAETQKEKAKQYTSECVRESGVSTEAINAAK 43
          N H++E  KE+A++Y  E   ES  +T      K
Sbjct: 17 NPHVSEEAKERARKYLKEHGSESHYTTGTTRGQK 50


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 62  KKSAIFNSDGTLNMDVALAKLPPGVNKSEAQSVLKQCKNKTGQGAAD 108
           + + +   DG++N  V +AKLP  V+        K+ KN T  G+++
Sbjct: 8   ESTEVKKKDGSMNKRVKVAKLPKKVDSFSP----KKKKNTTSSGSSE 50


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 13  LAETQKEKAKQYTSECVRESGVSTEAINAAKIGKYSKDKAFKNFVLCFFKKSAIFNSDGT 72
           +A  + ++++ Y    V E     +   AAK GK   +  F+ F L   K+  + +SDG 
Sbjct: 189 VASGKADESEFYAQPFVEEGEKDYDEAAAAKAGKSEWEIEFEKFKLEQKKQPDVASSDGD 248

Query: 73  LNMDVALA---KLPPGVNKSEAQSVLKQ 97
            + +       ++P  V+ S+++S  K+
Sbjct: 249 FSDEPESEERDEVPELVSSSKSKSKTKR 276


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 7   YSQNVHLAETQKEKAKQYTSECVRESGVSTEAINAAKIGKYSK 49
           Y  N       + KA+Q T+    E GVS EA+++A   K++K
Sbjct: 561 YPMNAQGKPLSRRKARQLTA---LELGVSPEALSSATSKKHNK 600


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 9/33 (27%), Positives = 20/33 (60%)

Query: 48 SKDKAFKNFVLCFFKKSAIFNSDGTLNMDVALA 80
          S++K  K  +  +++    +N+DGT+  ++ LA
Sbjct: 63 SRNKELKKLLYYYWEVCPKYNNDGTMKQEMILA 95


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 7   YSQNVHLAETQKEKAKQYTSECVRESGVSTEAINAAKIGKYSK 49
           + QN+ +AET     +      V  S V  E    +K  KY+K
Sbjct: 764 HKQNISMAETFSPSPRHDLLRQVAMSSVKAETKELSKFEKYAK 806


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 81  KLPPGVNKSEAQSVLKQCKNKTGQGAADK 109
           K P G+ K   QS+ +Q +    QGA ++
Sbjct: 9   KFPKGLTKDNIQSLYQQWQVMRNQGATEE 37


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 50  DKAFKNFVLCFFKKSAIFNS 69
           DKA K +V CF K   I  S
Sbjct: 352 DKATKQYVSCFLKVDGIMRS 371


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 40  NAAKIGKYSKDKAFKNFVLCFFKKSAIFNSDGT 72
           N     +Y+  KAF+  ++  FK    FNS GT
Sbjct: 445 NKLNHNEYASMKAFEADMVLMFKNCYKFNSAGT 477


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.130    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 527,871
Number of Sequences: 5004
Number of extensions: 18357
Number of successful extensions: 52
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 11
length of query: 127
length of database: 2,362,478
effective HSP length: 65
effective length of query: 62
effective length of database: 2,037,218
effective search space: 126307516
effective search space used: 126307516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)