Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002664-TA|BGIBMGA002664-PA|IPR000618|Insect cuticle
protein
         (197 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    43   2e-06
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   2.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.5  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.8  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   7.8  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 43.2 bits (97), Expect = 2e-06
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 115 NYDEDKYDFDFETENKIRAEEKAVLKNANSIDEGIASKGFYEYIGPDGFMYRVDYTADEN 174
           N+D + Y  +FET N I  +E    K  ++ +  + S+G   Y  PDG    + Y ADEN
Sbjct: 37  NFDGN-YINNFETSNGISHQESGQPKQVDN-ETPVVSQGSDSYTAPDGQQVSITYVADEN 94

Query: 175 GFRPKVKRLET 185
           GF+ +   + T
Sbjct: 95  GFQVQGSHIPT 105


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 97  YKDGYYKNNGIKIIKQKHNYDE 118
           Y + YY NN  K +    NY E
Sbjct: 313 YSNNYYNNNNYKKLYYNINYIE 334


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 124 DFETENKIRAEEKAVLKNANSIDEGIASKGFY---EYIGPDG 162
           D+E E  I  + K +++  N ID   A + FY   EY+  +G
Sbjct: 383 DWENEMNIITKGKPLIRVENIIDLEGAPQNFYYIEEYLPGNG 424


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 1/19 (5%)

Query: 173 ENGFRPKVKRLETPYSGKW 191
           EN  RP VK+++T  + +W
Sbjct: 338 ENNIRPMVKQIDT-VAAEW 355


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 91  PKDIPFYKDGY 101
           P+D+PF KD Y
Sbjct: 349 PEDLPFIKDIY 359


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 91  PKDIPFYKDGY 101
           P+D+PF KD Y
Sbjct: 55  PEDLPFIKDIY 65


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.141    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,937
Number of Sequences: 429
Number of extensions: 4561
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 197
length of database: 140,377
effective HSP length: 55
effective length of query: 142
effective length of database: 116,782
effective search space: 16583044
effective search space used: 16583044
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)